Factsheet for PGSC0003DMT400070310

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079785	Potato	cytosol	87.78	87.78
Solyc01g101190.2.1	Tomato	cytosol	86.82	48.91
PGSC0003DMT400075074	Potato	cytosol	26.05	38.94
CDY14934	Canola	cytosol	1.93	37.5
PGSC0003DMT400062798	Potato	cytosol, mitochondrion	14.79	34.33
PGSC0003DMT400047124	Potato	cytosol	34.08	34.08
PGSC0003DMT400067594	Potato	cytosol	26.05	33.33
AT5G48110.1	Thale cress	plastid	35.69	32.74
CDX95274	Canola	cytosol	13.83	32.33
CDX75774	Canola	cytosol, golgi, mitochondrion, plasma membrane	36.98	30.18
PGSC0003DMT400029354	Potato	cytosol	26.37	28.67
PGSC0003DMT400029275	Potato	cytosol	24.76	28.41
CDY71184	Canola	cytosol	29.58	27.54
Bra020921.1-P	Field mustard	cytosol	32.8	25.19
CDY23121	Canola	cytosol	30.23	24.74
Bra012513.1-P	Field mustard	cytosol	36.66	24.0
CDY06577	Canola	cytosol	25.08	23.78
CDY69236	Canola	cytosol	34.73	22.31
CDX82478	Canola	cytosol	37.3	21.6
CDY02143	Canola	plastid	38.26	21.52
PGSC0003DMT400089009	Potato	cytosol	10.93	21.12
Bra021566.1-P	Field mustard	plastid	34.08	20.87
CDY68962	Canola	cytosol	33.76	20.83
PGSC0003DMT400050941	Potato	cytosol	16.72	20.8
CDX98661	Canola	cytosol	36.66	20.47
Bra012955.1-P	Field mustard	plastid	37.94	19.7
CDX98470	Canola	plastid	36.66	19.52
CDY39124	Canola	cytoskeleton, cytosol, plastid	35.05	19.5
Bra021563.1-P	Field mustard	cytoskeleton, cytosol, plastid	35.05	19.5
CDX87217	Canola	plastid	37.62	19.47
PGSC0003DMT400029266	Potato	cytosol	25.72	19.18
Bra001555.1-P	Field mustard	plastid	37.3	19.08
AT1G70080.1	Thale cress	mitochondrion	37.3	18.99
CDY27296	Canola	cytosol	11.9	18.97
Bra021560.1-P	Field mustard	plastid	36.33	18.77
AT3G14490.1	Thale cress	plastid	36.01	18.64
CDY39119	Canola	plastid	36.01	18.6
AT3G14540.1	Thale cress	plastid	36.01	18.6
CDX82475	Canola	plastid	34.73	18.59
Bra035927.1-P	Field mustard	mitochondrion, plastid	33.76	18.49
AT3G32030.1	Thale cress	plastid	35.69	18.38
AT3G14520.1	Thale cress	plastid	35.69	18.35
Bra021564.1-P	Field mustard	plastid	35.37	18.24
PGSC0003DMT400029265	Potato	cytosol	29.9	18.13
AT1G31950.3	Thale cress	cytosol, endoplasmic reticulum, mitochondrion, plastid, vacuole	35.37	18.09
AT5G44630.1	Thale cress	cytosol	32.15	17.95
CDX74453	Canola	cytosol	30.55	17.89
Bra001557.1-P	Field mustard	plastid	34.73	17.88
CDY41707	Canola	plastid	33.44	17.87
Bra028251.1-P	Field mustard	cytosol	31.83	17.77
AT1G48820.1	Thale cress	mitochondrion, plastid	31.83	17.65
AT3G29190.1	Thale cress	plastid	34.08	17.64
CDY49723	Canola	plastid	33.76	17.62
AT3G29410.1	Thale cress	plastid	34.08	17.58
CDY13053	Canola	extracellular	31.19	17.54
Bra027931.1-P	Field mustard	plastid	33.44	17.3
CDX75776	Canola	plastid	32.48	17.21
Bra002714.1-P	Field mustard	plastid	32.48	17.15
CDY32356	Canola	plastid	34.08	17.1
AT4G15870.1	Thale cress	plastid	32.8	17.06
AT2G23230.2	Thale cress	plastid	33.44	17.02
AT4G13300.1	Thale cress	cytosol	30.23	16.97
AT1G48800.1	Thale cress	mitochondrion, plastid	32.8	16.92
Bra039519.1-P	Field mustard	cytosol	30.23	16.88
AT1G33750.1	Thale cress	mitochondrion, plastid	32.48	16.75
CDX76471	Canola	plastid	32.48	16.75
Bra002165.1-P	Field mustard	cytosol	29.9	16.73
CDY70719	Canola	cytosol	18.65	16.67
CDY63249	Canola	cytosol	29.58	16.55
CDX76457	Canola	plastid	31.83	16.47
AT4G13280.2	Thale cress	cytosol	29.26	16.43
CDY09324	Canola	plastid	31.51	16.36
AT4G20230.2	Thale cress	plastid	32.48	16.32
AT4G20200.1	Thale cress	plastid	31.51	16.23
Bra020953.1-P	Field mustard	plastid	31.51	16.07
CDY42473	Canola	cytosol	28.94	16.01
AT4G20210.1	Thale cress	plastid	30.87	16.0
AT1G66020.1	Thale cress	plastid	30.55	15.89
CDX98659	Canola	plastid	31.19	15.7
AT3G29110.1	Thale cress	plastid	29.9	15.63
CDY14933	Canola	cytosol	23.79	15.16
PGSC0003DMT400015998	Potato	plastid	27.65	14.8
PGSC0003DMT400095524	Potato	cytosol	20.26	14.32
CDY54565	Canola	plastid	26.37	14.26
CDX95273	Canola	plastid	16.72	12.41
CDX75775	Canola	plastid	18.33	11.78
Bra027609.1-P	Field mustard	cytosol	10.61	11.46
KRG93110	Soybean	mitochondrion	10.61	11.15
Bra002968.1-P	Field mustard	plastid	9.65	7.77
VIT_18s0001g05430.t01	Wine grape	cytosol	9.32	6.02
CDY67821	Canola	cytosol	3.22	5.15
VIT_18s0001g05460.t01	Wine grape	cytosol, mitochondrion	4.5	4.52
Bra012515.1-P	Field mustard	extracellular	2.89	3.64
PGSC0003DMT400055897	Potato	cytosol	1.29	3.31
CDY18347	Canola	cytosol	1.29	2.41
CDX82477	Canola	plastid	2.25	2.33
VIT_18s0001g04510.t01	Wine grape	plastid	1.93	1.96
VIT_18s0001g04200.t01	Wine grape	cytosol	0.64	1.68
CDY09325	Canola	plastid	0.64	0.74
CDY01639	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400070310	EnsemblPlantsGene:PGSC0003DMG400027337	Gene3D:1.10.600.10	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0010333	GO:GO:0016829	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	InterPro:Terpene_cyclase_like_1_C
InterPro:Terpene_synthase_metal-bd	PANTHER:PTHR31225	PANTHER:PTHR31225:SF25	PFAM:PF03936	PGSC:PGSC0003DMG400027337	SEG:seg
SUPFAM:SSF48576	UniParc:UPI000294BACC	UniProt:M1CLZ1	MapMan:9.1.4.2	:	:

Description

Vetispiradiene synthase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400027337]

Coordinates

chr11:-:4173307..4175648

Molecular Weight (calculated)

36103.1 Da

IEP (calculated)

4.787

GRAVY (calculated)

-0.273

Length

311 amino acids

Sequence
(BLAST)

001: MLHKQELAEV SRWWKELDFV TTLPYARDRV VECYFWTIGV YFEPQYSQAR VMLTKTIAMV SIVDDTFDAY GTVKELEKYT DAIQRWDINE IDRLPDYMKI
101: SYKALLDLFD DYEKELSSDG RSHVVYHAKE RMKEIVRSYN VEAKWFIEGH MPSVSEYLSN ALVTSTYYLL TTAAYLGMKS ATEQDFEWLS TNPKILEANV
201: TLCRVTDDIA TYEVEKGRGQ IATGIECYMR DYGVSTEEAM NKFQEMGETA WKDVNEGILR PVPVSTEILT RILNLVRIID VTYKHNQDGY THPEKVLKPH
301: IIALLVNSIA I

Best Arabidopsis Sequence Match ( AT1G70080.1 )
(BLAST)

001: MEAITKYGSY FNVRFLSRLC WRLNLSSSYH YPLLKSSLSF SRFQSPKKLC LVRATTNPTD DNSTTRSFTP HPPSLWGHHF LSASVNQTEM DDLWRQIEAL
101: KPIVNAMLLP CNGADAKKIT CFIHTLVSLG VSYHFEEKIV EFLKDAFENI EDMIIDCKED DLYTVSIIFR VFRLYGHYIT PDIFNRFKGD DGNFKKCLND
201: DVRGMLSFYE ASHFGTTTED ILEEAMSFTQ KHLELFLVGE KAKHYPHITK LIQAALYIPQ NFNLEILVAR EYIDFYELET DHNEMLLKLA KLNFRFLQLQ
301: YIQDLKTLTT WWKELDLVSK IPVYFRERLA EPYFWATGIY YEPQYSAARI MLAKSIILVD IVDNTFDVYG TIDEVKSLVQ AIERWDSDAV DVLPDYLKVV
401: FRTTFDLFKE LEEYVSSEAR SFTMQYAYEQ LRILMKGYLQ EAEWSNRGHL PSHEEYIEVG VASTAGEVLL AMTFIPMGDA AGVGVYEWLR SRPKLTHALF
501: VKSRLRDDIA TYKEEMKRGD VCNGINCYTK QHKVSEEEAC IEFEKKTNHM SKVMNEEFLK AAKFIPLHIL RPVLNYGRLA DVCYKYGDGY TFAGEKIKDY
601: ITSLYVDLIT L

Arabidopsis Description

TPS06Terpenoid synthase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q84UU9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.