Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400070310 | Potato | cytosol | 32.74 | 35.69 |
| PGSC0003DMT400079785 | Potato | cytosol | 31.56 | 34.41 |
| AT1G70080.1 | Thale cress | mitochondrion | 47.79 | 26.51 |
| AT4G13280.2 | Thale cress | cytosol | 41.59 | 25.45 |
| AT4G13300.1 | Thale cress | cytosol | 41.3 | 25.27 |
| PGSC0003DMT400075074 | Potato | cytosol | 15.34 | 25.0 |
| AT1G31950.3 | Thale cress | cytosol, endoplasmic reticulum, mitochondrion, plastid, vacuole | 43.36 | 24.18 |
| AT5G44630.1 | Thale cress | cytosol | 39.23 | 23.88 |
| AT4G20200.1 | Thale cress | plastid | 42.48 | 23.84 |
| Solyc01g101220.1.1 | Tomato | cytosol | 11.8 | 23.81 |
| AT3G14520.1 | Thale cress | plastid | 41.89 | 23.47 |
| AT1G66020.1 | Thale cress | plastid | 41.3 | 23.41 |
| GSMUA_Achr6P24330_001 | Banana | cytosol | 9.73 | 23.4 |
| AT3G29190.1 | Thale cress | plastid | 41.3 | 23.29 |
| AT3G29110.1 | Thale cress | plastid | 40.71 | 23.19 |
| AT4G20210.1 | Thale cress | plastid | 41.0 | 23.17 |
| AT3G14490.1 | Thale cress | plastid | 41.0 | 23.13 |
| AT1G48800.1 | Thale cress | mitochondrion, plastid | 41.0 | 23.05 |
| AT1G48820.1 | Thale cress | mitochondrion, plastid | 37.46 | 22.64 |
| AT3G14540.1 | Thale cress | plastid | 39.82 | 22.43 |
| GSMUA_Achr6P24340_001 | Banana | cytosol | 9.73 | 22.15 |
| AT4G20230.2 | Thale cress | plastid | 40.41 | 22.13 |
| AT4G15870.1 | Thale cress | plastid | 38.94 | 22.07 |
| AT2G23230.2 | Thale cress | plastid | 39.53 | 21.93 |
| Solyc01g101190.2.1 | Tomato | cytosol | 35.69 | 21.92 |
| AT3G32030.1 | Thale cress | plastid | 38.94 | 21.85 |
| AT1G33750.1 | Thale cress | mitochondrion, plastid | 38.64 | 21.72 |
| AT3G29410.1 | Thale cress | plastid | 37.46 | 21.06 |
| PGSC0003DMT400047124 | Potato | cytosol | 17.7 | 19.29 |
| PGSC0003DMT400050941 | Potato | cytosol | 14.16 | 19.2 |
| AT4G16730.1 | Thale cress | cytosol | 28.61 | 18.0 |
| AT4G16740.1 | Thale cress | mitochondrion | 27.14 | 16.28 |
| AT3G25810.1 | Thale cress | plastid | 28.02 | 15.89 |
| AT1G61680.1 | Thale cress | plastid | 25.07 | 14.94 |
| AT3G25830.1 | Thale cress | plastid | 26.25 | 14.83 |
| AT3G25820.1 | Thale cress | plastid | 26.25 | 14.83 |
| AT2G24210.1 | Thale cress | plastid | 25.37 | 14.55 |
| Os02t0458100-01 | Rice | plastid | 13.27 | 11.51 |
| VIT_18s0001g04200.t01 | Wine grape | cytosol | 3.83 | 10.92 |
| KRG93110 | Soybean | mitochondrion | 9.44 | 10.81 |
| VIT_18s0001g05460.t01 | Wine grape | cytosol, mitochondrion | 6.78 | 7.42 |
| VIT_18s0001g05430.t01 | Wine grape | cytosol | 9.14 | 6.43 |
| VIT_18s0001g04510.t01 | Wine grape | plastid | 5.01 | 5.56 |
Protein Annotations
| Gene3D:1.10.600.10 | MapMan:9.1.4.2 | ArrayExpress:AT5G48110 | EnsemblPlantsGene:AT5G48110 | RefSeq:AT5G48110 | TAIR:AT5G48110 |
| RefSeq:AT5G48110-TAIR-G | EnsemblPlants:AT5G48110.1 | TAIR:AT5G48110.1 | GO:GO:0000287 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 |
| GO:GO:0010333 | GO:GO:0016114 | GO:GO:0016829 | GO:GO:0046872 | InterPro:IPR008949 | InterPro:Isoprenoid_synthase_dom_sf |
| PFAM:PF03936 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009046 | PANTHER:PTHR31225 | PANTHER:PTHR31225:SF22 |
| SUPFAM:SSF48576 | InterPro:Terpene_cyclase_like_1_C | InterPro:Terpene_synthase_metal-bd | UniParc:UPI00000AC39F | SEG:seg | : |
Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein [Source:TAIR;Acc:AT5G48110]
Coordinates
chr5:-:19500988..19504534
Molecular Weight (calculated)
39866.0 Da
IEP (calculated)
5.193
GRAVY (calculated)
-0.222
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MSREYIQFYE QETHHDETLL KFAKINFKFM QLHYVQELQT IVKWWKELDL ESKIPNYYRV RAVECLYWAM AVYMEPQYSV ARIILSKSLV LWTIIDDLYD
101: AYCTLPEAIA FTENMERWET DAIDMPDHMK VLLRSLIDLM EDFKGEVRSE GRLYSVEYGI DEWKRLFRAD LTISKWARTG YIPNYDEYME VGIVTGGVDV
201: TVAFAFIGMG EAGKEAFDWI RSRPKFIQTI DLKSRLRDDV ATYKDEMARG EIATGINCYM KQYKVTEEEA FLEFHRRIKH TSKLVNEEYF KTTVPLKLVR
301: IAFNVGRVID TNYKHGDGLT YTGIVGGQIT SLFLDLITI
101: AYCTLPEAIA FTENMERWET DAIDMPDHMK VLLRSLIDLM EDFKGEVRSE GRLYSVEYGI DEWKRLFRAD LTISKWARTG YIPNYDEYME VGIVTGGVDV
201: TVAFAFIGMG EAGKEAFDWI RSRPKFIQTI DLKSRLRDDV ATYKDEMARG EIATGINCYM KQYKVTEEEA FLEFHRRIKH TSKLVNEEYF KTTVPLKLVR
301: IAFNVGRVID TNYKHGDGLT YTGIVGGQIT SLFLDLITI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.