Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G13300.1 | Thale cress | cytosol | 91.34 | 91.34 |
| CDY14934 | Canola | cytosol | 2.35 | 81.25 |
| AT5G44630.1 | Thale cress | cytosol | 54.87 | 54.58 |
| AT4G15870.1 | Thale cress | plastid | 48.19 | 44.65 |
| AT3G29190.1 | Thale cress | plastid | 47.47 | 43.76 |
| AT1G66020.1 | Thale cress | plastid | 46.93 | 43.48 |
| AT4G20230.2 | Thale cress | plastid | 47.11 | 42.16 |
| AT4G20200.1 | Thale cress | plastid | 45.85 | 42.05 |
| AT5G48110.1 | Thale cress | plastid | 25.45 | 41.59 |
| AT4G20210.1 | Thale cress | plastid | 44.95 | 41.5 |
| AT2G23230.2 | Thale cress | plastid | 45.67 | 41.41 |
| VIT_18s0001g04200.t01 | Wine grape | cytosol | 8.84 | 41.18 |
| AT1G48800.1 | Thale cress | mitochondrion, plastid | 44.04 | 40.46 |
| AT3G29110.1 | Thale cress | plastid | 43.14 | 40.17 |
| AT1G48820.1 | Thale cress | mitochondrion, plastid | 40.07 | 39.57 |
| AT1G70080.1 | Thale cress | mitochondrion | 41.52 | 37.64 |
| AT3G14490.1 | Thale cress | plastid | 40.61 | 37.44 |
| PGSC0003DMT400050941 | Potato | cytosol | 16.43 | 36.4 |
| AT3G14520.1 | Thale cress | plastid | 38.63 | 35.37 |
| AT3G14540.1 | Thale cress | plastid | 38.27 | 35.22 |
| AT1G31950.3 | Thale cress | cytosol, endoplasmic reticulum, mitochondrion, plastid, vacuole | 38.63 | 35.2 |
| AT3G32030.1 | Thale cress | plastid | 38.09 | 34.93 |
| PGSC0003DMT400075074 | Potato | cytosol | 12.82 | 34.13 |
| AT3G29410.1 | Thale cress | plastid | 36.64 | 33.66 |
| AT1G33750.1 | Thale cress | mitochondrion, plastid | 36.1 | 33.17 |
| Solyc01g101190.2.1 | Tomato | cytosol | 29.24 | 29.35 |
| PGSC0003DMT400079785 | Potato | cytosol | 16.43 | 29.26 |
| PGSC0003DMT400070310 | Potato | cytosol | 16.43 | 29.26 |
| Solyc01g101220.1.1 | Tomato | cytosol | 8.66 | 28.57 |
| VIT_18s0001g05460.t01 | Wine grape | cytosol, mitochondrion | 15.16 | 27.1 |
| PGSC0003DMT400047124 | Potato | cytosol | 15.16 | 27.01 |
| Os02t0458100-01 | Rice | plastid | 18.05 | 25.58 |
| VIT_18s0001g04510.t01 | Wine grape | plastid | 13.9 | 25.16 |
| AT4G16730.1 | Thale cress | cytosol | 24.01 | 24.68 |
| KRG93110 | Soybean | mitochondrion | 12.64 | 23.65 |
| AT4G16740.1 | Thale cress | mitochondrion | 23.47 | 23.01 |
| AT1G61680.1 | Thale cress | plastid | 23.29 | 22.67 |
| AT3G25810.1 | Thale cress | plastid | 24.19 | 22.41 |
| AT2G24210.1 | Thale cress | plastid | 23.65 | 22.17 |
| AT3G25830.1 | Thale cress | plastid | 23.65 | 21.83 |
| AT3G25820.1 | Thale cress | plastid | 23.65 | 21.83 |
| VIT_18s0001g05430.t01 | Wine grape | cytosol | 16.61 | 19.09 |
| GSMUA_Achr6P24330_001 | Banana | cytosol | 4.33 | 17.02 |
| GSMUA_Achr6P24340_001 | Banana | cytosol | 4.15 | 15.44 |
Protein Annotations
| Gene3D:1.10.600.10 | Gene3D:1.50.10.130 | EntrezGene:826958 | MapMan:9.1.4.2 | ProteinID:AEE83258.1 | ProteinID:ANM66087.1 |
| ArrayExpress:AT4G13280 | EnsemblPlantsGene:AT4G13280 | RefSeq:AT4G13280 | TAIR:AT4G13280 | RefSeq:AT4G13280-TAIR-G | EnsemblPlants:AT4G13280.2 |
| Symbol:ATTPS12 | Unigene:At.70329 | ProteinID:CAB40763.1 | ProteinID:CAB78370.1 | ncoils:Coil | GO:GO:0000287 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005777 | GO:GO:0006629 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009611 | GO:GO:0009975 | GO:GO:0009987 | GO:GO:0010333 | GO:GO:0016106 |
| GO:GO:0016114 | GO:GO:0016829 | GO:GO:0045338 | GO:GO:0046872 | GO:GO:0052683 | InterPro:IPR008949 |
| InterPro:IPR036965 | InterPro:Isoprenoid_synthase_dom_sf | RefSeq:NP_001328007.1 | RefSeq:NP_193064.2 | PFAM:PF01397 | PFAM:PF03936 |
| PANTHER:PTHR31225 | PANTHER:PTHR31225:SF22 | UniProt:Q9T0J9 | SUPFAM:SSF48239 | SUPFAM:SSF48576 | InterPro:Terpene_synth_N |
| InterPro:Terpene_synth_N_sf | InterPro:Terpene_synthase_metal-bd | InterPro:Terpenoid_cyclase/PrenylTrfase | UniParc:UPI0000EC9D38 | SEG:seg | : |
Description
TPS12(Z)-gamma-bisabolene synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0J9]
Coordinates
chr4:-:7733161..7736745
Molecular Weight (calculated)
63854.1 Da
IEP (calculated)
5.242
GRAVY (calculated)
-0.146
Length
554 amino acids
Sequence
(BLAST)
(BLAST)
001: MESQTTFKYE SLAFTKLSHC QWTDYFLSVP IDESELDVIT REIDILKPEV MELLSSQGDD ETSKRKVLLI QLLLSLGLAF HFENEIKNIL EHAFRKIDDI
101: TGDEKDLSTI SIMFRVFRTY GHNLPSSVFK RFTGDDGKFQ QSLTEDAKGI LSLYEAAHLG TTTDYILDEA LKFTSSHLKS LLAGGTCRPH ILRLIRNTLY
201: LPQRWNMEAV IAREYISFYE QEEDHDKMLL RLAKLNFKLL QLHYIKELKS FIKWWMELGL TSKWPSQFRE RIVEAWLAGL MMYFEPQFSG GRVIAAKFNY
301: LLTILDDACD HYFSIHELTR LVACVERWSP DGIDTLEDIS RSVFKLMLDV FDDIGKGVRS EGSSYHLKEM LEELNTLVRA NLDLVKWARG IQVPSFEEHV
401: EVGGIALTSY ATLMYSFVGM GETAGKEAYE WVRSRPRLIK SLAAKGRLMD DITDFDSDMS NGFAANAINY YMKQFVVTKE EAILECQRMI VDINKTINEE
501: LLKTTSVPGR VLKQALNFGR LLELLYTKSD DIYNCSEGKL KEYIVTLLID PIRL
101: TGDEKDLSTI SIMFRVFRTY GHNLPSSVFK RFTGDDGKFQ QSLTEDAKGI LSLYEAAHLG TTTDYILDEA LKFTSSHLKS LLAGGTCRPH ILRLIRNTLY
201: LPQRWNMEAV IAREYISFYE QEEDHDKMLL RLAKLNFKLL QLHYIKELKS FIKWWMELGL TSKWPSQFRE RIVEAWLAGL MMYFEPQFSG GRVIAAKFNY
301: LLTILDDACD HYFSIHELTR LVACVERWSP DGIDTLEDIS RSVFKLMLDV FDDIGKGVRS EGSSYHLKEM LEELNTLVRA NLDLVKWARG IQVPSFEEHV
401: EVGGIALTSY ATLMYSFVGM GETAGKEAYE WVRSRPRLIK SLAAKGRLMD DITDFDSDMS NGFAANAINY YMKQFVVTKE EAILECQRMI VDINKTINEE
501: LLKTTSVPGR VLKQALNFGR LLELLYTKSD DIYNCSEGKL KEYIVTLLID PIRL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.