Factsheet for PGSC0003DMT400050941

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g04200.t01	Wine grape	cytosol	25.2	52.94
PGSC0003DMT400062798	Potato	cytosol, mitochondrion	26.0	48.51
PGSC0003DMT400075074	Potato	cytosol	39.2	47.12
PGSC0003DMT400055897	Potato	cytosol	20.0	41.32
CDY18347	Canola	cytosol	24.4	36.75
CDY27296	Canola	cytosol	27.2	34.87
VIT_18s0001g05460.t01	Wine grape	cytosol, mitochondrion	40.4	32.58
PGSC0003DMT400089009	Potato	cytosol	20.8	32.3
Bra027609.1-P	Field mustard	cytosol	37.2	32.29
CDY67821	Canola	cytosol	24.0	30.93
PGSC0003DMT400047124	Potato	cytosol	38.0	30.55
Bra012515.1-P	Field mustard	extracellular	29.2	29.55
VIT_18s0001g04510.t01	Wine grape	plastid	34.8	28.43
CDY70719	Canola	cytosol	39.2	28.16
CDX82477	Canola	plastid	27.2	22.67
VIT_18s0001g05430.t01	Wine grape	cytosol	42.4	21.99
CDX95273	Canola	plastid	36.4	21.72
CDY68962	Canola	cytosol	41.2	20.44
CDY14933	Canola	cytosol	39.2	20.08
Bra021566.1-P	Field mustard	plastid	40.8	20.08
KRG93110	Soybean	mitochondrion	23.6	19.93
CDY69236	Canola	cytosol	37.6	19.42
CDX74453	Canola	cytosol	40.4	19.02
CDX82478	Canola	cytosol	40.4	18.81
Bra035927.1-P	Field mustard	mitochondrion, plastid	42.4	18.66
CDY39124	Canola	cytoskeleton, cytosol, plastid	41.2	18.43
PGSC0003DMT400015998	Potato	plastid	42.8	18.42
Bra021563.1-P	Field mustard	cytoskeleton, cytosol, plastid	40.8	18.25
CDX75776	Canola	plastid	42.4	18.06
Bra028251.1-P	Field mustard	cytosol	40.0	17.95
Bra039519.1-P	Field mustard	cytosol	40.0	17.95
CDY09325	Canola	plastid	19.2	17.78
Bra001557.1-P	Field mustard	plastid	42.8	17.72
Bra012513.1-P	Field mustard	cytosol	33.6	17.68
AT3G14490.1	Thale cress	plastid	42.4	17.64
CDY01639	Canola	cytosol	13.6	17.62
CDX98661	Canola	cytosol	39.2	17.59
CDX87217	Canola	plastid	42.0	17.47
Bra021564.1-P	Field mustard	plastid	42.0	17.41
AT1G33750.1	Thale cress	mitochondrion, plastid	42.0	17.41
Bra002968.1-P	Field mustard	plastid	26.8	17.36
Bra002714.1-P	Field mustard	plastid	40.4	17.15
CDY39119	Canola	plastid	41.2	17.11
Bra021560.1-P	Field mustard	plastid	41.2	17.11
AT5G44630.1	Thale cress	cytosol	38.0	17.06
Bra012955.1-P	Field mustard	plastid	40.8	17.03
PGSC0003DMT400029265	Potato	cytosol	34.8	16.96
AT3G14540.1	Thale cress	plastid	40.8	16.94
AT3G29410.1	Thale cress	plastid	40.8	16.92
CDY63249	Canola	cytosol	37.6	16.91
AT4G15870.1	Thale cress	plastid	40.4	16.89
CDY54565	Canola	plastid	38.8	16.87
AT3G14520.1	Thale cress	plastid	40.8	16.86
AT1G70080.1	Thale cress	mitochondrion	41.2	16.86
Bra027931.1-P	Field mustard	plastid	40.4	16.81
Bra002165.1-P	Field mustard	cytosol	37.2	16.73
PGSC0003DMT400079785	Potato	cytosol	20.8	16.72
PGSC0003DMT400070310	Potato	cytosol	20.8	16.72
CDX82475	Canola	plastid	38.8	16.7
Bra001555.1-P	Field mustard	plastid	40.4	16.61
AT1G31950.3	Thale cress	cytosol, endoplasmic reticulum, mitochondrion, plastid, vacuole	40.4	16.61
CDY49723	Canola	plastid	39.6	16.61
AT4G13300.1	Thale cress	cytosol	36.8	16.61
AT1G48820.1	Thale cress	mitochondrion, plastid	37.2	16.58
CDY06577	Canola	cytosol	21.6	16.46
AT4G13280.2	Thale cress	cytosol	36.4	16.43
AT3G32030.1	Thale cress	plastid	39.6	16.39
CDY09324	Canola	plastid	39.2	16.36
CDX75775	Canola	plastid	31.6	16.32
AT3G29110.1	Thale cress	plastid	38.4	16.13
CDX76471	Canola	plastid	38.8	16.09
CDX76457	Canola	plastid	38.4	15.97
CDY32356	Canola	plastid	39.6	15.97
Bra020953.1-P	Field mustard	plastid	38.8	15.9
Bra020921.1-P	Field mustard	cytosol	25.6	15.8
AT4G20230.2	Thale cress	plastid	38.8	15.67
AT4G20210.1	Thale cress	plastid	37.6	15.67
CDY41707	Canola	plastid	36.4	15.64
AT1G66020.1	Thale cress	plastid	37.2	15.55
AT2G23230.2	Thale cress	plastid	38.0	15.55
AT3G29190.1	Thale cress	plastid	37.2	15.47
CDX98470	Canola	plastid	36.0	15.41
AT4G20200.1	Thale cress	plastid	37.2	15.4
CDX98659	Canola	plastid	38.0	15.37
CDY23121	Canola	cytosol	23.2	15.26
CDY02143	Canola	plastid	33.6	15.19
CDY13053	Canola	extracellular	33.2	15.01
AT1G48800.1	Thale cress	mitochondrion, plastid	36.0	14.93
PGSC0003DMT400029266	Potato	cytosol	24.0	14.39
AT5G48110.1	Thale cress	plastid	19.2	14.16
CDY42473	Canola	cytosol	30.0	13.35
PGSC0003DMT400029354	Potato	cytosol	12.8	11.19
CDY71184	Canola	cytosol	14.0	10.48
PGSC0003DMT400095524	Potato	cytosol	18.4	10.45
CDX75774	Canola	cytosol, golgi, mitochondrion, plasma membrane	15.2	9.97
PGSC0003DMT400067594	Potato	cytosol	9.6	9.88
PGSC0003DMT400029275	Potato	cytosol	6.8	6.27
CDY14934	Canola	cytosol	0.4	6.25
CDX95274	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	InterPro:IPR008949
InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf	UniProt:M1BR33	PFAM:PF01397	PFAM:PF03936	EnsemblPlantsGene:PGSC0003DMG400019782
PGSC:PGSC0003DMG400019782	EnsemblPlants:PGSC0003DMT400050941	PANTHER:PTHR31225	PANTHER:PTHR31225:SF22	SUPFAM:SSF48239	SUPFAM:SSF48576
InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI000296ABB6	:

Description

Sesquiterpene synthase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400019782]

Coordinates

chr6:+:41914686..41915637

Molecular Weight (calculated)

29864.9 Da

IEP (calculated)

8.570

GRAVY (calculated)

-0.352

Length

250 amino acids

Sequence
(BLAST)

001: MQRLGVAYHF VNEIETSIQN IFYAFQQNDD NLYVVSLRFR LVRQQGHYMS SDVFKQFTNQ DGKFKETLTN DVQGLLSLYE ASHLRVRDEE ILEEALTFTT
101: THLESIVSNL CNNSLKVEVI EALKQPIRMT LPRVGARKYI SIYKINDAHN HLLLKFAKLD FNVLQKFHQR ELSELTRWWK DLDFANKYPY ARDRLVECYF
201: WILRRYFEPK YSRARKMLTK VLKMTSIIDD TFDAYATYDE LVPFIDVIQR

Best Arabidopsis Sequence Match ( AT1G31950.2 )
(BLAST)

001: MEAIRIGFGL PNVHSVPLCL TTTRCLFPRQ RLLHSHTPSW KPAKQQDFFV ASSSKKSSDD LESSLPTPHF SPSLWGDHFL SVSLNRAVEF DELEREIETT
101: KPLARDKLMS SESSDKEKIR LIHLLVSMGI SYHFDKEIQD ILKHSFTKLD DIIVGEDDLE TISIMFEVFK LYGHKMSCDA FDRFRGNDGR FKESLVRDFR
201: GMLQLFEVAH LGTPCEVIMD EALSFTRNHL ESLTSGNAST ASPHLLKHIQ NSLYIPRYCN IEVLVAREYI SYYEQEEGHD EILLKFAKLN FNFCQFHYVQ
301: ELKTLTKWWR DLDLASKLPY IRDRLVESHL VALGPYFEPH YSLGRIIVAK INMIMVVVDD TYDAYATLPQ VKALTECLQR WSIEVSDKLP DYLRIVLGSL
401: FDVMGEIERE MRPLGRLYRV KQVVEKIKII TKAYQEIAKW ARTGHVSTFD EYMKVGVLTA GMADYAAYCF IGMEDINEKE AFEWLNSNPL IIKHLTAMFR
501: LANDVGTYEV HCISKGSLGS FLSISHFF

Arabidopsis Description

Terpenoid cyclases/Protein prenyltransferases superfamily protein [Source:TAIR;Acc:AT1G31950]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.