CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41707	Canola	plastid	98.5	22.51
Bra027931.1-P	Field mustard	plastid	96.24	21.3
CDY23121	Canola	cytosol	60.15	21.05
GSMUA_Achr6P24330_001	Banana	cytosol	21.05	19.86
GSMUA_Achr6P24340_001	Banana	cytosol	21.8	19.46
CDY14934	Canola	cytosol	2.26	18.75
CDY71184	Canola	cytosol	41.35	16.47
CDY13053	Canola	extracellular	64.66	15.55
CDY69236	Canola	cytosol	51.13	14.05
PGSC0003DMT400070310	Potato	cytosol	32.33	13.83
CDX75774	Canola	cytosol, golgi, mitochondrion, plasma membrane	38.35	13.39
PGSC0003DMT400079785	Potato	cytosol	30.83	13.18
CDY06577	Canola	cytosol	32.33	13.11
CDY68962	Canola	cytosol	49.62	13.1
CDX98661	Canola	cytosol	49.62	11.85
CDY66920	Canola	cytosol	26.32	10.57
CDY53129	Canola	cytosol	20.3	10.55
CDY53648	Canola	cytosol	20.3	10.55
CDY42473	Canola	cytosol	42.86	10.14
CDY63249	Canola	cytosol	41.35	9.89
CDX76457	Canola	plastid	44.36	9.82
CDY54565	Canola	plastid	42.11	9.74
CDX82478	Canola	cytosol	39.1	9.68
CDX76471	Canola	plastid	42.86	9.45
CDX98659	Canola	plastid	43.61	9.39
CDY09324	Canola	plastid	42.11	9.35
CDY49723	Canola	plastid	40.6	9.06
CDX74453	Canola	cytosol	36.09	9.04
CDY02143	Canola	plastid	36.84	8.86
CDX82475	Canola	plastid	38.35	8.78
CDY39124	Canola	cytoskeleton, cytosol, plastid	36.09	8.59
CDX98470	Canola	plastid	37.59	8.56
CDX87217	Canola	plastid	38.35	8.49
Solyc01g101190.2.1	Tomato	cytosol	33.83	8.15
CDY39119	Canola	plastid	36.09	7.97
CDX75776	Canola	plastid	34.59	7.84
CDY32356	Canola	plastid	36.09	7.74
CDY54750	Canola	cytosol	21.8	7.23
CDY62515	Canola	cytosol	21.8	7.23
CDY14933	Canola	cytosol	24.81	6.76
CDY12909	Canola	cytosol	11.28	6.47
CDY13587	Canola	plastid	27.07	6.11
CDX83558	Canola	plastid	27.07	6.11
CDY13589	Canola	plastid	25.56	6.1
CDX83560	Canola	plastid	25.56	6.02
CDX90785	Canola	plastid	25.56	5.73
CDX76827	Canola	plastid	23.31	5.55
CDY21487	Canola	plastid	23.31	5.21
CDX83208	Canola	plastid	23.31	5.21
CDY13590	Canola	endoplasmic reticulum, extracellular, plastid	24.81	4.83
PGSC0003DMT400075074	Potato	cytosol	3.01	1.92
CDY67821	Canola	cytosol	2.26	1.55
CDY70719	Canola	cytosol	2.26	0.86
CDX75775	Canola	plastid	2.26	0.62
CDX82477	Canola	plastid	0.75	0.33
CDY68676	Canola	cytosol	0.75	0.27
VIT_18s0001g05430.t01	Wine grape	cytosol	0.75	0.21
PGSC0003DMT400050941	Potato	cytosol	0.0	0.0
PGSC0003DMT400047124	Potato	cytosol	0.0	0.0
VIT_18s0001g04510.t01	Wine grape	plastid	0.0	0.0
VIT_18s0001g04200.t01	Wine grape	cytosol	0.0	0.0
VIT_18s0001g05460.t01	Wine grape	cytosol, mitochondrion	0.0	0.0
Solyc01g101220.1.1	Tomato	cytosol	0.0	0.0
Os02t0458100-01	Rice	plastid	0.0	0.0
KRG93110	Soybean	mitochondrion	0.0	0.0
CDY72187	Canola	cytosol, mitochondrion, nucleus, plastid	0.0	0.0
CDY68788	Canola	endoplasmic reticulum, golgi	0.0	0.0
CDY61957	Canola	plastid	0.0	0.0
CDY27296	Canola	cytosol	0.0	0.0
CDY18347	Canola	cytosol	0.0	0.0
CDY15827	Canola	cytosol	0.0	0.0
CDY12910	Canola	plastid	0.0	0.0
CDY09325	Canola	plastid	0.0	0.0
CDY01639	Canola	cytosol	0.0	0.0
CDX95273	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDX95274	EnsemblPlantsGene:GSBRNA2T00100909001	Gene3D:1.10.600.10	GO:A0A078E403	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0010333	GO:GO:0016829	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf
InterPro:Terpene_synthase_metal-bd	PANTHER:PTHR31225	PANTHER:PTHR31225:SF22	PFAM:PF03936	ProteinID:CDX95274	ProteinID:CDX95274.1
SUPFAM:SSF48576	UniParc:UPI0004EEEA07	MapMan:50.4.2	:	:	:

Description

BnaC09g15960D

Coordinates

chrLK031887:+:1073002..1073488

Molecular Weight (calculated)

15464.8 Da

IEP (calculated)

8.180

GRAVY (calculated)

-0.525

Length

133 amino acids

Sequence
(BLAST)

001: MAMKDICKKE AYEWLKSGDK LVIAMYTVTR VLNDIHGYED DMSRGYVTNS INCYKKQYGV TEKEAFEKLH QIIANANKMI NEELLKPANM PRQIIKEMLN
101: YQRITNVSYE IGDEFTRPGG KLKSHVTSMY LDL

Best Arabidopsis Sequence Match ( AT1G48800.1 )
(BLAST)

001: MEAIRVFGPK LGSRLSIRSH TTAFPACKLS RFPLTSFPGK HAHLVLLKAT TIPLASGDKE NNRKFEKLGP SEWGNQFLFA HVDLSEMDAL EREIEALKPK
101: VRDMFMSFKG MKSNKKNLFL IYLLVSLGLA HHFEDEIEES VKGCSQEMVE MMDGENDLYT VSIIFWVFRT YGHNISSDIF NRFKGHNGKF KECLATDAKG
201: ILSLYEAAHM GTTTDYILDE ALSFTLSYLE SLAANGTCKP NLVRRIRNAL GLLQNKNVEI LVAKEYIRFY EQEEDCDKTI LEFSMLNLKF LQLHYLQELK
301: LLTKWYKEQD FESKLPPYYR DRIVELHLAT LAYINPKYSR VRIILTMIYT IQIILDDTCD RYASLREVES LAATIERWDH NDHAMEGLPD YLKSVAKFIF
401: HTFQEFEREV SSESGGSYSL KATIEDCKRM MRSNLQLAKW AVTGHLPSFD EYLDVAGVEI AVYFTVAGIL LGMENINKKE AYEWLIFRDK LVRAMSTKAR
501: LVNDLFGYKD DMRRGYVTNS INCYKKQYGV TEEEAFRKLH QMVADGDKMM NEEFLKPINV PHQVLKAVLD TLRAINICYD NEDGFTRLNG NLKNYITSMY
601: VDL

Arabidopsis Description

TPS28Terpenoid synthase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9C748]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.