Factsheet for PGSC0003DMT400095524

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007730.1.1	Tomato	cytosol	91.14	71.35
VIT_00s0392g00060.t01	Wine grape	cytosol	33.64	35.32
VIT_00s0392g00030.t01	Wine grape	cytosol	25.0	34.7
PGSC0003DMT400055897	Potato	cytosol	9.09	33.06
VIT_00s0361g00060.t01	Wine grape	cytosol	41.59	32.33
KRH22759	Soybean	cytosol	40.23	31.16
PGSC0003DMT400067594	Potato	cytosol	16.82	30.45
KRH55947	Soybean	cytosol	21.36	29.1
TraesCS2B01G030900.1	Wheat	plastid	28.18	26.27
KRH26550	Soybean	cytosol	25.0	26.19
TraesCS2B01G031600.1	Wheat	mitochondrion	29.09	24.62
Zm00001d004279_P001	Maize	mitochondrion	26.59	24.27
HORVU2Hr1G003390.1	Barley	plastid	32.27	23.91
PGSC0003DMT400015998	Potato	plastid	31.36	23.75
TraesCS2D01G023100.1	Wheat	plastid	30.45	23.72
HORVU2Hr1G003360.2	Barley	plastid	30.68	23.48
TraesCS2A01G022600.1	Wheat	plastid	30.68	23.4
TraesCS2B01G031000.1	Wheat	plastid	30.23	23.37
TraesCS2D01G023600.1	Wheat	plastid	30.23	23.29
PGSC0003DMT400029275	Potato	cytosol	14.32	23.25
TraesCS2B01G032300.2	Wheat	plastid	29.77	23.1
PGSC0003DMT400029266	Potato	cytosol	21.82	23.02
TraesCS2B01G031100.1	Wheat	plastid	29.55	22.93
TraesCS2A01G022400.1	Wheat	plastid	29.55	22.93
HORVU2Hr1G003420.1	Barley	plastid	29.32	22.75
TraesCS2D01G023800.1	Wheat	plastid	30.23	22.73
TraesCS2A01G022300.1	Wheat	plastid	30.68	22.69
Zm00001d018611_P001	Maize	cytosol, extracellular, mitochondrion, peroxisome	21.82	22.59
TraesCS7D01G487700.2	Wheat	cytosol	22.27	22.48
PGSC0003DMT400029265	Potato	cytosol	25.68	22.03
TraesCS2B01G031500.1	Wheat	plastid	26.59	21.95
PGSC0003DMT400029354	Potato	cytosol	14.09	21.68
TraesCS7B01G407200.1	Wheat	cytosol	28.64	21.58
HORVU7Hr1G111960.3	Barley	cytosol, nucleus, peroxisome	28.64	21.32
TraesCS7A01G500100.1	Wheat	cytosol	29.09	21.16
OQU81208	Sorghum	mitochondrion, plastid	27.95	21.1
TraesCS2B01G031400.1	Wheat	cytosol	12.73	20.82
TraesCS2B01G031300.1	Wheat	cytosol	12.73	20.82
EER92447	Sorghum	plastid	28.18	20.39
PGSC0003DMT400070310	Potato	cytosol	14.32	20.26
PGSC0003DMT400079785	Potato	cytosol	13.18	18.65
PGSC0003DMT400089009	Potato	cytosol	6.82	18.63
PGSC0003DMT400050941	Potato	cytosol	10.45	18.4
PGSC0003DMT400075074	Potato	cytosol	8.18	17.31
PGSC0003DMT400047124	Potato	cytosol	12.05	17.04
TraesCSU01G238200.1	Wheat	plastid	14.55	16.29
KXG34246	Sorghum	cytosol	24.32	14.88
PGSC0003DMT400062798	Potato	cytosol, mitochondrion	4.32	14.18

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:50.4.2	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	InterPro:IPR008949
InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf	UniProt:M1DWI1	PFAM:PF01397	PFAM:PF03936	EnsemblPlantsGene:PGSC0003DMG400045095
PGSC:PGSC0003DMG400045095	EnsemblPlants:PGSC0003DMT400095524	PANTHER:PTHR31225	PANTHER:PTHR31225:SF9	SUPFAM:SSF48239	SUPFAM:SSF48576
InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI00029480B8	:

Description

Alpha-farnesene synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400045095]

Coordinates

chr3:-:49338900..49341521

Molecular Weight (calculated)

50699.5 Da

IEP (calculated)

5.986

GRAVY (calculated)

-0.360

Length

440 amino acids

Sequence
(BLAST)

001: KKKYQIEAEK LKVEVISCTF SKSDTPVALL ELVDEIDKFG LTNYFDVQTK AALEKTIMCM KSSSSTKENK DLYATALCFR LLRQHGYYAS QDMLKELLDS
101: KGTKKMSDIK TLLELLEGSY LSMDGENLLN DIRLFTTNNL MNTSFTTNNK ENLSNYFPLA WRVRWYDVRR HITMFAQQGN NNTNQVLLNL AKLNFNIIQA
201: THLKDLKDVI RWDPNEVKCL PECIQICFRA LYDTEEEISA EIDDQQKGCC PSAFARLKQG WLNFCKAMLV EAKWYNEGHI STLEEYLNNG WISSTVPLLS
301: DYVIYGFTNN KITNESLDSS KNFQEIIYHT SVIFRLCNDQ GTSTAELERG DVASSIICYM QQENVSEDIA REHIESIILD SWKKINYHFN TLSTSHREIA
401: KHVINIARMG HVMYQFGDGF GVQDGKTRHQ ILINLMEPIT

Best Arabidopsis Sequence Match ( AT3G25820.1 )
(BLAST)

001: MATLRISSAL IYQNTLTHHF RLRRPHRFVC KSMTKTTPDT TLVELSRRSG NYQPSPWNHC YLLSIENKYA SETEVITRDV LKKKVKSMLD DEKKSRLEQL
101: ELIDDLQKLG VSYHFEIEIN DTLTDLHLKM GRNCWKCDKE EDLHATSLEF RLLRQHGFDV SENIFDVIID QIESNTFKTN NINGIISLYE ASYLSTKSDT
201: KLHKVIRPFA TEQIRKFVDD EDTKNIEVRE KAYHALEMPY HWRMRRLDTR WYIDAYEKKH DMNLVLIEFA KIDFNIVQAA HQEDLKYVSR WWKDTCLTNQ
301: LPFVRDRIVE NYFWTVGLIY EPQFGYIRRI MTIVNALVTT IDDIYDIYGT LEELELFTSM VENWDVNRLG ELPEYMRLCF LILYNEINGI GCDILKYKKI
401: DVIPYLKKSW ADLCRTYLVE AKWYKRGYKP SLEEYMQNAW ISISAPTILI HFYCVFSDQI SVQNLETLSQ HRQHIVRCSA TVLRLANDLG TSPTELARGD
501: VLKSVQCYMH ETGASEERAR DHVHQMISDM WDDMNSETKT ACNSSSRSRG FKEAAMNLAR MSQCMYQYGD GHGCPEKAKT IDRVQSLLVD PIPLDVNRLG

Arabidopsis Description

TPS271,8-cineole synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P0DI77]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.