CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004279_P001	Maize	mitochondrion	66.72	80.71
TraesCS2B01G031300.1	Wheat	cytosol	28.13	60.97
TraesCS2B01G031400.1	Wheat	cytosol	27.96	60.59
TraesCS2A01G022400.1	Wheat	plastid	53.34	54.85
TraesCS2B01G031600.1	Wheat	mitochondrion	48.89	54.81
TraesCS2D01G023100.1	Wheat	plastid	52.66	54.34
TraesCS2B01G031000.1	Wheat	plastid	53.0	54.31
TraesCS2B01G031500.1	Wheat	plastid	49.23	53.85
TraesCS2D01G023600.1	Wheat	plastid	52.66	53.77
HORVU2Hr1G003360.2	Barley	plastid	53.0	53.74
HORVU2Hr1G003420.1	Barley	plastid	52.14	53.62
TraesCS2B01G031100.1	Wheat	plastid	51.97	53.44
TraesCS2B01G032300.2	Wheat	plastid	51.46	52.91
TraesCS2A01G022300.1	Wheat	plastid	53.0	51.93
TraesCS2B01G030900.1	Wheat	plastid	41.85	51.69
TraesCSU01G238200.1	Wheat	plastid	34.65	51.4
TraesCS2A01G022600.1	Wheat	plastid	50.77	51.3
HORVU2Hr1G003390.1	Barley	plastid	52.14	51.18
TraesCS2D01G023800.1	Wheat	plastid	51.29	51.11
EER92447	Sorghum	plastid	50.77	48.68
VIT_00s0392g00030.t01	Wine grape	cytosol	21.27	39.12
VIT_00s0361g00060.t01	Wine grape	cytosol	34.82	35.87
VIT_00s0392g00060.t01	Wine grape	cytosol	24.01	33.41
KRH22759	Soybean	cytosol	31.9	32.75
KRH26550	Soybean	cytosol	23.33	32.38
KRH55947	Soybean	cytosol	17.67	31.89
Solyc02g079890.1.1	Tomato	cytosol, plastid	29.5	31.44
KXG34246	Sorghum	cytosol	36.88	29.9
Solyc03g007730.1.1	Tomato	cytosol	28.64	29.72
EES04391	Sorghum	cytosol	20.75	29.02
PGSC0003DMT400095524	Potato	cytosol	21.1	27.95
EES04392	Sorghum	plastid	23.84	25.14
EES04390	Sorghum	plastid	24.19	25.0
KXG29327	Sorghum	plastid	23.16	24.55
EES04394	Sorghum	endoplasmic reticulum	23.84	23.36
OQU92401	Sorghum	cytosol	22.3	23.01
EES09506	Sorghum	cytosol	20.07	21.31
OQU83527	Sorghum	cytosol	9.26	21.26

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	EntrezGene:8083449	MapMan:9.1.4.2	UniProt:A0A1Z5RBU6	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010333
GO:GO:0016829	GO:GO:0046872	InterPro:IPR008949	InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf	EnsemblPlants:OQU81208
ProteinID:OQU81208	ProteinID:OQU81208.1	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF9
EnsemblPlantsGene:SORBI_3006G027500	SUPFAM:SSF48239	SUPFAM:SSF48576	unigene:Sbi.7589	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N
InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI000B8B9FDE	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:5641631..5647001

Molecular Weight (calculated)

67057.2 Da

IEP (calculated)

7.541

GRAVY (calculated)

-0.372

Length

583 amino acids

Sequence
(BLAST)

001: MSLKTTVRPS AKAAGHHYAG HHQVWCLSAP PAKQDAAKPR RRSANYRPTS WDYDALLSLA SGRPNLQDCP SSYYKLKTNI RDMLIKKAEP FSKLWTIDAM
101: QRLGISYHFQ DEISNILYSI SNESAKDHTY DNIAFTALKF RLLRENGFPE TLGYNFNVAG QLGYHNYGNC TTKTPRQEDV NTLLLLHEAS YLAFGDEEIL
201: DVARTYSAKA LKELMPSMLP HLREAVAHAL EIPLHWRAPR LETRWFIDYY ARDINMCPLL LQFAKLDFNQ VQDEHQKDLA AVTWWWRNIG LGEKLPFARD
301: RLMECFHYAN GIVWDPKLGP CRQMLAKVSN LIVHLDDVYD VYGTMDELVL FTNAIARWDA IPNERLPEYM KALYSVIYHT SNEVAEHALK EHGCSMHYHL
401: QKLWHDICMA FLLEAKWHHG NCRPSIQKYL ENGWVSSSAP LLLSHAFSML HSVINMNTIS KMQTTHRLVQ QVSLIFRLCN DSATHMDELQ RGDAPSFIAI
501: NMAENGGNED DSRKVMQDLI LKSWKVINEE AFDSRQYSTP FNKACVNLAR ISHCVYQGGD GIGRPNDLKK RQIRDLFLDP VHI

Best Arabidopsis Sequence Match ( AT3G25810.1 )
(BLAST)

001: MATLCIGSAP IYQNACIHNF RLQRPRRFIS KSMTKTMPDA NPLDLRRRSG NYQPSSWDHS YLLSIENKYV NEKEVITRHV LKKKVKKMLE EVETKSRLEK
101: LELIDDLQKL GVSYHFEQEI NNILTNFHLE NGKNIWKCDK EEDLHATALE FRLLRQHGFG VSEDIFDVII DKIESNTFKS DNITSIITLY EASYLSTKSD
201: TKLHKVIRPF ATEQIRNFVD DESETYNIML REMAIHALEI PYHWRMRRLE TRWYIDAYEK KHDMNLFLAE FAKIDFNIVQ TAHQEDVKYV SCWWKETGLG
301: SQLHFVRDRI VENYFWTVGM IYEPQFGYIR RIVAIVAALI TVIDDIYDIY GTPEELELFT AMVQNWDINR LDELPEYMKL CFLTLFNEIN AMGCDVLKCK
401: NIDVIPYFKK SWADLCKAYL VEAKWYKGGY KPSVEEYMQN AWISISAPTM LIHFYCAFSG QISVQILESL VQQQQDVVRC SATVLRLAND LATSPDELAR
501: GDVLKSVQCY MHETGVSEEE ARTHVQQMIS HTWDEMNYEA RTAARSSSLL SRRFVETAMN LARMSQCMYQ HGDGHGCPDK AKIVDRVQTL LVDPIPLD

Arabidopsis Description

TPS24Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.