CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU81208	Sorghum	mitochondrion, plastid	48.68	50.77
VIT_00s0392g00030.t01	Wine grape	cytosol	20.23	38.8
VIT_00s0361g00060.t01	Wine grape	cytosol	34.38	36.93
KRH26550	Soybean	cytosol	23.68	34.29
VIT_00s0392g00060.t01	Wine grape	cytosol	23.52	34.13
KRH22759	Soybean	cytosol	31.09	33.27
KRH55947	Soybean	cytosol	16.94	31.89
KXG34246	Sorghum	cytosol	36.68	31.02
Solyc02g079890.1.1	Tomato	cytosol, plastid	27.8	30.9
Solyc03g007730.1.1	Tomato	cytosol	28.29	30.61
EES04391	Sorghum	cytosol	20.23	29.5
PGSC0003DMT400095524	Potato	cytosol	20.39	28.18
EES04390	Sorghum	plastid	25.16	27.13
KXG29327	Sorghum	plastid	24.51	27.09
OQU92401	Sorghum	cytosol	25.16	27.08
EES04392	Sorghum	plastid	24.34	26.76
EES04394	Sorghum	endoplasmic reticulum	25.0	25.55
EES09506	Sorghum	cytosol	22.53	24.95
OQU83527	Sorghum	cytosol	9.54	22.83

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	UniProt:C5WPA0	EnsemblPlants:EER92447	ProteinID:EER92447
ProteinID:EER92447.2	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	GO:GO:0046872	InterPro:IPR008949	InterPro:IPR036965
InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF9	EnsemblPlantsGene:SORBI_3001G415100
SUPFAM:SSF48239	SUPFAM:SSF48576	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd
InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI00081ABF2F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:69668369..69673258

Molecular Weight (calculated)

69342.8 Da

IEP (calculated)

6.692

GRAVY (calculated)

-0.361

Length

608 amino acids

Sequence
(BLAST)

001: MYMHIGSACT VRGAAMATTP KWVQQQQQQQ PCAPAARRAA GYTVVRCSSL PEGPAPQLQL PPPIRRSANY QPNSWNYDSL ESSLAGCNKR NREGDPSSFD
101: KLKFRVRHLL LQQEVEILTK LRVIDTVQRL GVAYHFDDEI SAILNSVSTE KQDVDRVDDV RLMTLSFRLL RQNNYPVSPE VVLRSLKDGT GNFKKTLQKD
201: TEGLLSLYEA SHLAFEGDHL LDEARVFSTE ALRELRPSMH PHLRSSVDNA LAVPLHWAAP RLQARWFINH YARDSDADLS LLHFAKLDFN NVQKLQQQEL
301: SRITRWWRNA DLSESLPFAR DRLMECFYFA TGVAPEPSLE ACREVVAKTF ALIVLLDDIY DIYGTLDELV MFTDAIERWG TSASEQLPEY MKAIYLTIVS
401: TSNEVAEHVL RQEGCDARFL LKKAWHDLCK AFLMEAKWHY SNYKPTLHEY LENGWISVSG PLMLIHAFPI IEKKGVTPNS IQQLESYPKL VQMVSKIFRL
501: CNDSATHSEE LKRGDAPSSI AIYMSENRAT EHDARKAMRD LTMETWKTVN QDAFSNCRFP LPFANACVNM ARISHCIYRG GGDGISAPDD EKMMEIKELF
601: LQPFKVEN

Best Arabidopsis Sequence Match ( AT4G16740.1 )
(BLAST)

001: MPKRQAQRRF TRKTDSKTPS QPLVSRRSAN YQPSLWQHEY LLSLGNTYVK EDNVERVTLL KQEVSKMLNE TEGLLEQLEL IDTLQRLGVS YHFEQEIKKT
101: LTNVHVKNVR AHKNRIDRNR WGDLYATALE FRLLRQHGFS IAQDVFDGNI GVDLDDKDIK GILSLYEASY LSTRIDTKLK ESIYYTTKRL RKFVEVNKNE
201: TKSYTLRRMV IHALEMPYHR RVGRLEARWY IEVYGERHDM NPILLELAKL DFNFVQAIHQ DELKSLSSWW SKTGLTKHLD FVRDRITEGY FSSVGVMYEP
301: EFAYHRQMLT KVFMLITTID DIYDIYGTLE ELQLFTTIVE KWDVNRLEEL PNYMKLCFLC LVNEINQIGY FVLRDKGFNV IPYLKESWAD MCTTFLKEAK
401: WYKSGYKPNF EEYMQNGWIS SSVPTILLHL FCLLSDQTLD ILGSYNHSVV RSSATILRLA NDLATSSEEL ARGDTMKSVQ CHMHETGASE AESRAYIQGI
501: IGVAWDDLNM EKKSCRLHQG FLEAAANLGR VAQCVYQYGD GHGCPDKAKT VNHVRSLLVH PLPLN

Arabidopsis Description

TPS03Tricyclene synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A4FVP2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.