CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04391	Sorghum	cytosol	68.97	93.29
EES04392	Sorghum	plastid	67.91	69.26
KXG29327	Sorghum	plastid	66.67	68.36
TraesCS7A01G261500.1	Wheat	cytosol	20.04	66.47
HORVU6Hr1G012090.1	Barley	cytosol	44.5	66.23
TraesCS6A01G067300.1	Wheat	cytosol	55.14	66.17
TraesCS6B01G091000.1	Wheat	cytosol	49.65	65.57
Os10t0489500-00	Rice	cytosol	58.33	64.38
TraesCS6B01G091200.1	Wheat	cytosol	19.15	63.53
EES04394	Sorghum	endoplasmic reticulum	65.78	62.35
TraesCS2A01G478100.1	Wheat	cytosol	37.94	62.21
TraesCS6A01G067500.1	Wheat	plastid	56.03	61.96
TraesCS6A01G067800.1	Wheat	plastid	59.57	61.2
TraesCS6B01G091500.1	Wheat	plastid	59.75	61.16
HORVU6Hr1G088610.2	Barley	cytosol, mitochondrion	55.14	61.1
TraesCS6A01G067700.1	Wheat	plastid	59.57	61.09
TraesCS6D01G065100.1	Wheat	plastid	59.4	60.91
TraesCS6B01G090500.1	Wheat	plastid	59.75	60.39
TraesCS6D01G065200.1	Wheat	plastid	58.33	60.37
TraesCS6B01G413300.1	Wheat	cytosol, endoplasmic reticulum	58.33	60.37
HORVU6Hr1G012270.1	Barley	plastid	58.16	60.29
TraesCS6B01G090800.1	Wheat	plastid	58.69	60.29
TraesCS6D01G048600.1	Wheat	plastid	58.16	60.18
TraesCSU01G116700.1	Wheat	plastid	58.69	60.18
TraesCSU01G116600.1	Wheat	plastid	58.69	60.18
TraesCSU01G116900.1	Wheat	plastid	59.75	60.07
TraesCS6A01G067600.1	Wheat	plastid	58.51	60.0
TraesCS6B01G091100.1	Wheat	plastid	58.51	60.0
TraesCS6B01G092800.1	Wheat	plastid	58.16	59.74
TraesCS6B01G092000.1	Wheat	plastid	57.45	59.67
TraesCS6B01G091300.1	Wheat	plastid	58.16	59.64
TraesCS6B01G091400.1	Wheat	plastid	59.4	59.61
HORVU6Hr1G012170.1	Barley	plastid	57.8	59.38
TraesCS2B01G501400.1	Wheat	plastid	57.8	59.27
TraesCS2D01G477300.1	Wheat	plastid	58.69	58.58
Os02t0121700-01	Rice	plastid	61.52	58.32
TraesCS7D01G540300.1	Wheat	cytosol, plastid	56.21	58.27
TraesCS6B01G091700.1	Wheat	plastid	56.38	58.14
HORVU6Hr1G012110.1	Barley	plastid	58.33	54.56
VIT_00s0372g00060.t01	Wine grape	cytosol	15.78	47.59
GSMUA_Achr2P03420_001	Banana	cytosol	40.6	47.51
GSMUA_Achr9P21010_001	Banana	cytosol	39.54	46.56
Solyc10g005420.1.1	Tomato	cytosol	6.74	46.34
VIT_00s0572g00010.t01	Wine grape	cytosol	35.46	44.44
PGSC0003DMT400029354	Potato	cytosol	22.16	43.71
VIT_00s0271g00030.t01	Wine grape	cytosol	37.23	43.57
PGSC0003DMT400029275	Potato	cytosol	20.92	43.54
VIT_00s0372g00020.t01	Wine grape	cytosol	30.67	42.61
VIT_00s0266g00020.t01	Wine grape	cytosol	36.7	42.51
VIT_00s0271g00010.t01	Wine grape	cytosol	36.88	42.28
VIT_00s0847g00020.t01	Wine grape	cytosol	30.5	41.85
VIT_00s0572g00020.t01	Wine grape	cytosol	37.59	41.81
VIT_00s0266g00010.t01	Wine grape	cytosol	37.41	41.62
VIT_00s0372g00040.t01	Wine grape	cytosol	37.23	41.42
PGSC0003DMT400029266	Potato	cytosol	30.5	41.25
PGSC0003DMT400029265	Potato	cytosol	35.64	39.18
VIT_00s0266g00070.t01	Wine grape	cytosol	35.11	38.3
VIT_00s0271g00060.t01	Wine grape	cytosol, plastid	38.83	37.95
VIT_00s0385g00020.t01	Wine grape	cytosol	34.04	37.8
VIT_00s0385g00010.t01	Wine grape	cytosol, plastid	31.91	36.73
Solyc10g005390.2.1	Tomato	cytosol	35.46	35.52
KRH21637	Soybean	cytosol	32.98	34.83
KRH49914	Soybean	plastid	35.11	34.55
KRH41974	Soybean	cytosol	17.55	34.02
Solyc05g026590.1.1	Tomato	cytosol	17.2	33.8
VIT_00s0372g00070.t01	Wine grape	cytosol, plasma membrane, plastid	37.77	33.02
KRH49915	Soybean	plastid	33.69	32.31
AT1G61680.1	Thale cress	plastid	31.91	31.63
Solyc10g005410.2.1	Tomato	plastid	34.22	30.68
EER92447	Sorghum	plastid	27.13	25.16
OQU81208	Sorghum	mitochondrion, plastid	25.0	24.19
OQU83527	Sorghum	cytosol	10.64	23.62
EES09506	Sorghum	cytosol	20.57	21.13
OQU92401	Sorghum	cytosol	21.1	21.06
KXG34246	Sorghum	cytosol	24.11	18.92

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	UniProt:C5XT10	EnsemblPlants:EES04390	ProteinID:EES04390
ProteinID:EES04390.2	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	GO:GO:0046872	InterPro:IPR008949	InterPro:IPR036965
InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF0	EnsemblPlantsGene:SORBI_3004G018900
SUPFAM:SSF48239	SUPFAM:SSF48576	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd
InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0007F2BBDA	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:1484206..1488727

Molecular Weight (calculated)

63586.7 Da

IEP (calculated)

6.180

GRAVY (calculated)

-0.155

Length

564 amino acids

Sequence
(BLAST)

001: MAMGAAPAHI FPTTVQPLLL PAATPVVAGD GRRGGGRLGS RSCPSPAATK TLLPTTSDLD VQFQLQRGIT DVRKTFLGCG RSGREMTMAT VDNLKRLCID
101: HYFEEEIESA MSSTCMDLLH SDDLLDATLS FRLMRETGHH VSADDVLRRF TNGAGKFSLA LSKDTMGLLS LHDMSHLDIG EEQTLHEAKE FSRKHLASAI
201: SNMEPGLARY VRQSLDHPYH LSLMQYKARH HLSYLQNLPS RSTAAMEELA VAEFQLNKML HQMEMKEIKR WWMNLGLAQE IPVARDQVLK WYTWSMTILQ
301: GSSFSKYRVE ITKIISIAYV VDDIFDLVGT LEELSLFTEA IKMWDVAAAD SLPCYMRSCY KALYTVTNEM ADMAENEHGL NPIDHLRKAW AMLFDAFMVE
401: AKWLATDQVP SADEYLRNGV ITSVVPLAFV HILFLLGHHH AASGNAAELS DSIPPAITSL SKILRLWDDM GSAKDEAQEG LDGSYRELYL REHPAAAGDV
501: EEHMRRLIAK EWQELNRECF SRRTFSSCLA QACLNAARMV SVMYMYDKEH RLPVLEDYMR LLLL

Best Arabidopsis Sequence Match ( AT1G61680.1 )
(BLAST)

001: MALIATKISS RSCFVSAYPN NSPTFLISKF PNTVDSLSPA NTAKRSILRN VHASVSNPSK QFHNKTSLEY LHELNIKKIK NILSANVDVP SENLEMIDVI
101: QSLGIDLHFR QEIEQTLHMI YKEGLQFNGD LHEIALRFRL LRQEGHYVQE IIFKNILDKK GGFKDVVKND VKGLTELFEA SELRVEGEET LDGAREFTYS
201: RLNELCSGRE SHQKQEIMKS LAQPRHKTVR GLTSKRFTSM IKIAGQEDPE WLQSLLRVAE IDSIRLKSLT QGEMSQTFKW WTELGLEKDV EKARSQPLKW
301: HTWSMKILQD PTLTEQRLDL TKPISLVYVI DDIFDVYGEL EELTIFTRVV ERWDHKGLKT LPKYMRVCFE ALDMITTEIS MKIYKSHGWN PTYALRQSWA
401: SLCKAFLVEA KWFNSGYLPT TEEYMKNGVV SSGVHLVMLH AYILLGEELT KEKVELIESN PGIVSSAATI LRLWDDLGSA KDENQDGTDG SYVECYLNEY
501: KGSTVDEART HVAQKISRAW KRLNRECLNP CPFSRSFSKA CLNIARTVPL MYSYDDDQRL PDEYLKSLM

Arabidopsis Description

TPS14S-(+)-linalool synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84UV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.