CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0108600-00	Rice	cytosol	16.03	62.86
TraesCS6B01G008700.1	Wheat	cytosol	55.01	55.41
OQU92401	Sorghum	cytosol	36.07	35.04
OQU83527	Sorghum	cytosol	13.11	28.35
EER92447	Sorghum	plastid	24.95	22.53
EES04391	Sorghum	cytosol	16.21	21.34
KXG29327	Sorghum	plastid	20.77	20.73
EES04390	Sorghum	plastid	21.13	20.57
EES04392	Sorghum	plastid	20.58	20.43
OQU81208	Sorghum	mitochondrion, plastid	21.31	20.07
EES04394	Sorghum	endoplasmic reticulum	20.77	19.16
KXG34246	Sorghum	cytosol	20.77	15.86

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	EntrezGene:8076783	MapMan:9.1.4.2	UniProt:C5Y793	ncoils:Coil
EnsemblPlants:EES09506	ProteinID:EES09506	ProteinID:EES09506.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	GO:GO:0046872
InterPro:IPR008949	InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225
PANTHER:PTHR31225:SF7	EnsemblPlantsGene:SORBI_3005G079300	SUPFAM:SSF48239	SUPFAM:SSF48576	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N
InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0001A868A0	RefSeq:XP_002450518.1	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:10374102..10381293

Molecular Weight (calculated)

63207.9 Da

IEP (calculated)

5.013

GRAVY (calculated)

-0.267

Length

549 amino acids

Sequence
(BLAST)

001: MGDLDPKRPS IRTLEESKWT RYFMQPSPLP CSSQPNQRIM DRRDELVWKV RCMIQGFIRN TEDLLLGMKT VDALQRLGLG YHFEEDISKF MHILSRTSMG
101: GDDLFALALQ FRLLRQHHYN VASEIFNNFM DENGDFKDAL RSNVDGLLSL YEAAHLGKSD EDLLRKAIIF TKDCLSSLVN GGQLPKPVLQ EVLHALDLPT
201: QRRIKRLEAK LYISIYENGD ESNQDIVELA KLNFHMLQQM HRDEVRTISL WWYNDLNPSS LGPYMRKRPV ECYYWALGIF YEPQYAKARI VLTKLLTLLT
301: MFDDIIDSYG TMEEVHLFNQ AVQSWNEEAA KQIGDGYWYL IFHISKTLEE FVSKDGGSPM AIDCFKETLK AGSKAMVQEL VWREEGQVPT VHEYLKQGAA
401: VSILYWPIAV ISFAGMFPSD DEIFTWAGSY PKIIESSTTL CRLMDDVAGH ENEKEERSKC VTAVECYVRE HGVTVQEAKQ ALTCLVDEQW RCINQELYKS
501: DQAVPIALLD PVLDLVRVME EVYKGVDMYT KCSGVVDPIH KLLNECVEH

Best Arabidopsis Sequence Match ( AT4G15870.1 )
(BLAST)

001: MYSISLVVNM QCISAYGSIL SLPLRSNLFS VRKLSSFPHK SFSGQHGKLV RMKATPTRAC HDQESNRKFK RLPLSKWGHH FLSAQVDVSE MNALAQEIER
101: LKPEVGEMLM FSSKSIESTK KRILFIYMLV SLGVAFHFED EIEQSLEEGF EKIQEMIAGE DDLYTISIMF WVFRTYGYNM STDVFKRFKG ENEKFMESIT
201: SDVKGMVSLY EAAHLRTTRE DILEEALSFT TRNLESLARA GASSPHILMR IRNALCMPQH YNAEMIFARE YISFYEQEED HNKMLLRFAK INFKFLQLNW
301: IQELKTLTKW WKQQDLASKL PPYFRDRLIE CYLFAIMIYF EPQFSLGRVS LAKINTVFTL VDDTCDRYGN VSEVAALVQC VERWDPDCMD SLPDYMKTVF
401: KFAWNTFEEC ENAGIMEEGL SYDVQGALEE WEQGDVVPTF DEYLEIGGVE VTMYVSIACS FLGLGQSSRE QAYKWLKSRP KFVEAQAKRA RLMNDIAGFE
501: GDMSRGFDVN AIMYYMKQYK VTEEETFTRL QKMARDLDTT VNEEILKTTK SVPRQILKRA IDFGKMIEFT YRSGEEYTHP EGRFKDHITS LFVDLIRL

Arabidopsis Description

TPS01Terpenoid synthase 1 [Source:UniProtKB/Swiss-Prot;Acc:O23651]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.