CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0362032-00	Rice	cytosol	44.09	46.09
Zm00001d047440_P001	Maize	cytosol	43.31	37.04
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	33.07	33.47
OQU92401	Sorghum	cytosol	29.53	13.27
EES09506	Sorghum	cytosol	28.35	13.11
EES04390	Sorghum	plastid	23.62	10.64
KXG29327	Sorghum	plastid	22.05	10.18
EES04392	Sorghum	plastid	22.05	10.13
EER92447	Sorghum	plastid	22.83	9.54
OQU81208	Sorghum	mitochondrion, plastid	21.26	9.26
EES04394	Sorghum	endoplasmic reticulum	21.26	9.08
EES04391	Sorghum	cytosol	12.2	7.43
KXG34246	Sorghum	cytosol	20.08	7.09

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:50.4.2	UniProt:A0A1Z5RIN3	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	InterPro:IPR008949	InterPro:IPR036965
InterPro:Isoprenoid_synthase_dom_sf	EnsemblPlants:OQU83527	ProteinID:OQU83527	ProteinID:OQU83527.1	PFAM:PF01397	PANTHER:PTHR31225
PANTHER:PTHR31225:SF20	EnsemblPlantsGene:SORBI_3005G130450	SUPFAM:SSF48239	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpenoid_cyclase/PrenylTrfase
UniParc:UPI000B8BA7B9	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:56769755..56771111

Molecular Weight (calculated)

28621.2 Da

IEP (calculated)

5.334

GRAVY (calculated)

-0.172

Length

254 amino acids

Sequence
(BLAST)

001: MEATATTGIG AAGAFEPSLW DDYFVTYTPP PSLRSEEWMR QRADKLKKEV LLMFDDHSSA MSAANTLTLV DALERLGIDH LFQQQIDAAM CRVHSKETEF
101: TAGSSMELHM SALRFRLLRQ HGFFVPTDVF DKYITDGTGS FSTMGLTGDD TRALLSLYNA AHMAVPGEDI LDNVISFTRS RLIAIKGHVA SPLSDQISRA
201: LDIPLPRYLR PLETMHYITE YDKEEAYDAT VLELARLNYS ITRSLHLKEI RTFC

Best Arabidopsis Sequence Match ( AT5G23960.2 )
(BLAST)

001: MGSEVNRPLA DFPANIWEDP LTSFSKSDLG TETFKEKHST LKEAVKEAFM SSKANPIENI KFIDALCRLG VSYHFEKDIV EQLDKSFDCL DFPQMVRQEG
101: CDLYTVGIIF QVFRQFGFKL SADVFEKFKD ENGKFKGHLV TDAYGMLSLY EAAQWGTHGE DIIDEALAFS RSHLEEISSR SSPHLAIRIK NALKHPYHKG
201: ISRIETRQYI SYYEEEESCD PTLLEFAKID FNLLQILHRE ELACVTRWHH EMEFKSKVTY TRHRITEAYL WSLGTYFEPQ YSQARVITTM ALILFTALDD
301: MYDAYGTMEE LELFTDAMDE YSICNIIPIP DSMKFIYNVT VEFYDKLDEE LEKEGRSGCG FHLKKSLQKT ANGYMQEAKW LKKDYIATFD EYKENAILSS
401: GYYALIAMTF VRMTDVAKLD AFEWLSSHPK IRVASEIISR FTDDISSYEF EHKREHVATG IDCYMQQFGV SKERAVEVMG NIVSDAWKDL NQELMRPHVF
501: PFPLLMRVLN LSRVIDVFYR YQDAYTNPKL LKEHIVSLLI ETIPI

Arabidopsis Description

TPS21Alpha-humulene/(-)-(E)-beta-caryophyllene synthase [Source:UniProtKB/Swiss-Prot;Acc:Q84UU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.