Factsheet for GSMUA_AchrUn_randomP28980_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0362032-00	Rice	cytosol	36.26	37.45
OQU83527	Sorghum	cytosol	33.47	33.07
Zm00001d047440_P001	Maize	cytosol	33.47	28.28
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular	37.05	22.36
GSMUA_AchrUn_...	Banana	plastid	37.05	21.99
GSMUA_AchrUn_...	Banana	plastid	37.05	19.87
GSMUA_Achr4P08090_001	Banana	plastid	38.25	17.52
GSMUA_Achr4P08100_001	Banana	plastid	38.25	17.52
TraesCS5B01G018200.1	Wheat	cytosol, mitochondrion, plastid	37.85	17.24
HORVU7Hr1G122730.1	Barley	cytosol	34.66	17.23
GSMUA_Achr4P07680_001	Banana	plastid	37.45	17.06
GSMUA_AchrUn_...	Banana	plastid	38.65	16.67
TraesCS6B01G008700.1	Wheat	cytosol	35.86	16.51
GSMUA_Achr4P07700_001	Banana	plastid	37.85	16.35
TraesCS7A01G499300.2	Wheat	cytosol	35.86	16.33
HORVU5Hr1G005860.1	Barley	cytosol	36.26	16.19
GSMUA_Achr7P25710_001	Banana	mitochondrion	37.05	16.06
GSMUA_Achr7P25700_001	Banana	plastid	36.65	15.83
GSMUA_Achr7P25720_001	Banana	plastid	36.65	15.73
GSMUA_Achr7P25740_001	Banana	plastid	37.05	15.58
GSMUA_Achr11P...	Banana	cytosol	29.88	15.0
GSMUA_AchrUn_...	Banana	plastid	25.9	13.46
GSMUA_Achr2P03420_001	Banana	cytosol	25.5	13.28
GSMUA_Achr9P21010_001	Banana	cytosol	22.71	11.9
GSMUA_Achr4P07690_001	Banana	cytosol	0.4	0.58
GSMUA_Achr6P24340_001	Banana	cytosol	0.0	0.0
GSMUA_Achr6P24330_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:50.4.2	ncoils:Coil	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010333	GO:GO:0016829
EnsemblPlantsGene:GSMUA_AchrUn_randomG28980_001	EnsemblPlants:GSMUA_AchrUn_randomP28980_001	EnsemblPlants:GSMUA_AchrUn_randomT28980_001	InterPro:IPR008949	InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf
UniProt:M0UDA5	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF7	SUPFAM:SSF48239
SUPFAM:SSF48576	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI000296091B

Description

Putative (+)-delta-cadinene synthase isozyme C2 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG28980_001]

Coordinates

chrchrUn_random:+:140010861..140012712

Molecular Weight (calculated)

28952.5 Da

IEP (calculated)

4.919

GRAVY (calculated)

-0.215

Length

251 amino acids

Sequence
(BLAST)

001: MSSQCLVASV VEEVARKTSG YHPSVWGDYF ITHDNHEWME ERSRELREQI KSMLQDYSDL LQTMQLIDAI QLLGVAYHFE KEISDALSKV YDADFNTHGL
101: YEASLRFRLL RQHGYNISPC NVFNKFKDEE GSFMSDLKGD VEGLLSLYNA AYLGTHGETI LDEVISFTRS ILTSMLSDLE PPLLSKVSLS LETPLFRRTK
201: RLLTRNYISI YQEDATRNDV LLELAKLDFN LVQSLHREEL KSLSMLVFSL F

Best Arabidopsis Sequence Match ( AT5G23960.2 )
(BLAST)

001: MGSEVNRPLA DFPANIWEDP LTSFSKSDLG TETFKEKHST LKEAVKEAFM SSKANPIENI KFIDALCRLG VSYHFEKDIV EQLDKSFDCL DFPQMVRQEG
101: CDLYTVGIIF QVFRQFGFKL SADVFEKFKD ENGKFKGHLV TDAYGMLSLY EAAQWGTHGE DIIDEALAFS RSHLEEISSR SSPHLAIRIK NALKHPYHKG
201: ISRIETRQYI SYYEEEESCD PTLLEFAKID FNLLQILHRE ELACVTRWHH EMEFKSKVTY TRHRITEAYL WSLGTYFEPQ YSQARVITTM ALILFTALDD
301: MYDAYGTMEE LELFTDAMDE YSICNIIPIP DSMKFIYNVT VEFYDKLDEE LEKEGRSGCG FHLKKSLQKT ANGYMQEAKW LKKDYIATFD EYKENAILSS
401: GYYALIAMTF VRMTDVAKLD AFEWLSSHPK IRVASEIISR FTDDISSYEF EHKREHVATG IDCYMQQFGV SKERAVEVMG NIVSDAWKDL NQELMRPHVF
501: PFPLLMRVLN LSRVIDVFYR YQDAYTNPKL LKEHIVSLLI ETIPI

Arabidopsis Description

TPS21Alpha-humulene/(-)-(E)-beta-caryophyllene synthase [Source:UniProtKB/Swiss-Prot;Acc:Q84UU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.