Factsheet for Zm00001d047440_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0362032-00	Rice	cytosol	41.75	51.03
OQU83527	Sorghum	cytosol	37.04	43.31
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	28.28	33.47
Zm00001d029523_P001	Maize	cytosol	25.25	14.82
Zm00001d018611_P001	Maize	cytosol, extracellular, mitochondrion, peroxisome	18.52	12.94
Zm00001d004279_P001	Maize	mitochondrion	20.54	12.66
Zm00001d015054_P001	Maize	plastid	24.24	12.54
Zm00001d015053_P001	Maize	plastid	24.24	12.39
Zm00001d053916_P002	Maize	cytosol	17.85	11.91
Zm00001d053918_P001	Maize	cytosol	4.04	4.2

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:50.4.2	ProteinID:AQL06449.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	InterPro:IPR008949	InterPro:IPR036965
InterPro:Isoprenoid_synthase_dom_sf	UniProt:K7WDC8	PFAM:PF01397	PANTHER:PTHR31225	PANTHER:PTHR31225:SF20	SUPFAM:SSF48239
SUPFAM:SSF48576	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI000220B189	EnsemblPlantsGene:Zm00001d047440
EnsemblPlants:Zm00001d047440_P001	EnsemblPlants:Zm00001d047440_T001	SEG:seg	:	:	:

Description

terpene synthase21(+)-delta-cadinene synthase isozyme XC1

Coordinates

chr9:+:130209326..130210515

Molecular Weight (calculated)

33340.0 Da

IEP (calculated)

4.946

GRAVY (calculated)

-0.069

Length

297 amino acids

Sequence
(BLAST)

001: MGERANFLKG EVRKKFEAAA MSAIDAAMLV DAVVHLGIDH CFREEIATAL RSVHEDEEGE FGSCDDLHTV AVRFLVLRQH GLWVSADVFD KFRDDKGSFS
101: KSLLCSNPRG LLSLYNAAHM AVTPEEKVLD DAIAFARSHL VEAMIGELRS PMVEQVSRSF DIPLPRFSRR LESMHYIAEY GQEEEGHDAQ ILELARLEFE
201: LVRSLHLREL REICSAEYGA TGEEAFAFIA NMTENAWRKI NQACMEMDPA MLPAFKVAVV DLSRSIEIIY LGGKRDAYTF GSNLKDLVTS LFLKPCA

Best Arabidopsis Sequence Match ( AT5G23960.2 )
(BLAST)

001: MGSEVNRPLA DFPANIWEDP LTSFSKSDLG TETFKEKHST LKEAVKEAFM SSKANPIENI KFIDALCRLG VSYHFEKDIV EQLDKSFDCL DFPQMVRQEG
101: CDLYTVGIIF QVFRQFGFKL SADVFEKFKD ENGKFKGHLV TDAYGMLSLY EAAQWGTHGE DIIDEALAFS RSHLEEISSR SSPHLAIRIK NALKHPYHKG
201: ISRIETRQYI SYYEEEESCD PTLLEFAKID FNLLQILHRE ELACVTRWHH EMEFKSKVTY TRHRITEAYL WSLGTYFEPQ YSQARVITTM ALILFTALDD
301: MYDAYGTMEE LELFTDAMDE YSICNIIPIP DSMKFIYNVT VEFYDKLDEE LEKEGRSGCG FHLKKSLQKT ANGYMQEAKW LKKDYIATFD EYKENAILSS
401: GYYALIAMTF VRMTDVAKLD AFEWLSSHPK IRVASEIISR FTDDISSYEF EHKREHVATG IDCYMQQFGV SKERAVEVMG NIVSDAWKDL NQELMRPHVF
501: PFPLLMRVLN LSRVIDVFYR YQDAYTNPKL LKEHIVSLLI ETIPI

Arabidopsis Description

TPS21Alpha-humulene/(-)-(E)-beta-caryophyllene synthase [Source:UniProtKB/Swiss-Prot;Acc:Q84UU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.