Factsheet for GSMUA_Achr4P08090_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P07690_001	Banana	cytosol	27.19	87.13
GSMUA_Achr4P07680_001	Banana	plastid	80.47	80.04
GSMUA_AchrUn_...	Banana	plastid	83.94	79.04
GSMUA_AchrUn_...	Banana	plastid	60.95	78.96
GSMUA_Achr4P07700_001	Banana	plastid	81.57	76.94
GSMUA_Achr4P08100_001	Banana	plastid	76.64	76.64
GSMUA_AchrUn_...	Banana	plastid	64.96	76.07
GSMUA_AchrUn_...	Banana	plastid	64.42	73.08
GSMUA_Achr7P25740_001	Banana	plastid	58.76	53.94
GSMUA_Achr7P25710_001	Banana	mitochondrion	55.66	52.68
GSMUA_Achr7P25720_001	Banana	plastid	56.02	52.48
GSMUA_Achr7P25700_001	Banana	plastid	55.29	52.15
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	17.52	38.25
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular	29.01	38.22
GSMUA_Achr6P24340_001	Banana	cytosol	9.31	34.23
GSMUA_Achr6P24330_001	Banana	cytosol	8.58	33.33
GSMUA_Achr11P...	Banana	cytosol	30.11	33.0
GSMUA_Achr9P21010_001	Banana	cytosol	25.55	29.23
GSMUA_Achr2P03420_001	Banana	cytosol	25.55	29.05

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr4G08090_001	EnsemblPlants:GSMUA_Achr4P08090_001	EnsemblPlants:GSMUA_Achr4T08090_001	InterPro:IPR008949	InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf
UniProt:M0SM26	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF16	SUPFAM:SSF48239
SUPFAM:SSF48576	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase
UniParc:UPI0002949AD4	SEG:seg	:	:	:	:

Description

Putative Myrcene synthase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G08090_001]

Coordinates

chr4:-:6002225..6004665

Molecular Weight (calculated)

63275.1 Da

IEP (calculated)

6.816

GRAVY (calculated)

-0.399

Length

548 amino acids

Sequence
(BLAST)

001: MAFCASAPSF CCRLIGAHQR TAPSKPSPRR CLLLPTRCNA QIPSPRRSAN YQPSSWSDEY IQSLRNDTKV QEDNARRMGK LTKDVKQLIY MKKGIEDQLQ
101: LIDHLQQLGV SYHFKEDIKD ALWKIYRSME EVNMLLKDNL HATALMFRLL REHGFAVSEG VFNRFIVEKG NLKASLRHQT EGLVSLYEAS HLAQEGEHML
201: EEAINFTTKQ LKSLTEGSLE PHLREHVAHA LELPLNWRMP RLQTRWFIEA SQREAKMNPV LLELAKLDFN RVQSIHQREL REVSRYFELA LLESCHTKAN
301: CLITTIDDVY DVYGTMDELE LFTDAVDRWD VNATGKLPEY MKICFIALFN TTNDTAYNVM KEKGLYIIPH LKKALTYRSH PPSFHQGYTP ILEEYLENAL
401: LSVSGPLILT LAYCTSDDVS QDTLEDFHSC PEIARRSSMI LRLCDDLGTS KDELERGDVS KSIQCCMHES SLSEYAAREY IGRLIRKNWR AINGDQSFTS
501: RFEENLKMMF INIPRMAQCM YQYGDGHGKS DRVIEDRIRS LLIEPILL

Best Arabidopsis Sequence Match ( AT2G24210.1 )
(BLAST)

001: MATLLQIGSG VIYSNALRKT LRRPQSSTCI IVTETTPCNK SPTVQRRSAN YQPSRWDHHH LLSVENKFAK DKRVRERDLL KEKVRKMLND EQKTYLDQLE
101: FIDDLQKLGV SYHFEAEIDN ILTSSYKKDR TNIQESDLHA TALEFRLFRQ HGFNVSEDVF DVFMENCGKF DRDDIYGLIS LYEASYLSTK LDKNLQIFIR
201: PFATQQLRDF VDTHSNEDFG SCDMVEIVVQ ALDMPYYWQM RRLSTRWYID VYGKRQNYKN LVVVEFAKID FNIVQAIHQE ELKNVSSWWM ETGLGKQLYF
301: ARDRIVENYF WTIGQIQEPQ YGYVRQTMTK INALLTTIDD IYDIYGTLEE LQLFTVAFEN WDINRLDELP EYMRLCFLVI YNEVNSIACE ILRTKNINVI
401: PFLKKSWTDV SKAYLVEAKW YKSGHKPNLE EYMQNARISI SSPTIFVHFY CVFSDQLSIQ VLETLSQHQQ NVVRCSSSVF RLANDLVTSP DELARGDVCK
501: SIQCYMSETG ASEDKARSHV RQMINDLWDE MNYEKMAHSS SILHHDFMET VINLARMSQC MYQYGDGHGS PEKAKIVDRV MSLLFNPIPL D

Arabidopsis Description

TPS10Tricyclene synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUH4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.