CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04392	Sorghum	plastid	86.0	85.53
Zm00001d053918_P001	Maize	cytosol	44.0	84.62
EES04394	Sorghum	endoplasmic reticulum	86.55	80.0
EES04391	Sorghum	cytosol	54.55	71.94
TraesCS7A01G261500.1	Wheat	cytosol	21.64	70.0
HORVU6Hr1G012090.1	Barley	cytosol	47.45	68.87
TraesCS6B01G091200.1	Wheat	cytosol	20.91	67.65
EES04390	Sorghum	plastid	68.36	66.67
TraesCS6B01G091000.1	Wheat	cytosol	51.27	66.04
TraesCS6A01G067300.1	Wheat	cytosol	55.82	65.32
TraesCS6A01G067500.1	Wheat	plastid	59.45	64.12
Os10t0489500-00	Rice	cytosol	59.45	63.99
TraesCS6D01G065200.1	Wheat	plastid	62.91	63.49
TraesCS6A01G067700.1	Wheat	plastid	63.45	63.45
TraesCS6B01G091100.1	Wheat	plastid	63.45	63.45
TraesCS6A01G067600.1	Wheat	plastid	63.45	63.45
TraesCS6B01G092800.1	Wheat	plastid	63.27	63.39
TraesCS6B01G090800.1	Wheat	plastid	63.27	63.39
TraesCS6D01G048600.1	Wheat	plastid	62.55	63.12
TraesCSU01G116600.1	Wheat	plastid	63.09	63.09
TraesCS6B01G091300.1	Wheat	plastid	63.09	63.09
HORVU6Hr1G088610.2	Barley	cytosol, mitochondrion	58.36	63.06
TraesCS6A01G067800.1	Wheat	plastid	62.91	63.02
TraesCSU01G116700.1	Wheat	plastid	62.91	62.91
TraesCS6B01G091500.1	Wheat	plastid	62.91	62.79
TraesCS2B01G501400.1	Wheat	plastid	62.73	62.73
TraesCS2A01G478100.1	Wheat	cytosol	39.09	62.5
HORVU6Hr1G012170.1	Barley	plastid	62.36	62.48
TraesCS6D01G065100.1	Wheat	plastid	62.36	62.36
TraesCS6B01G413300.1	Wheat	cytosol, endoplasmic reticulum	61.45	62.02
TraesCS6B01G091400.1	Wheat	plastid	63.09	61.74
HORVU6Hr1G012270.1	Barley	plastid	60.55	61.21
TraesCS2D01G477300.1	Wheat	plastid	62.55	60.88
TraesCS6B01G090500.1	Wheat	plastid	61.45	60.57
TraesCS6B01G091700.1	Wheat	plastid	60.0	60.33
TraesCS6B01G092000.1	Wheat	plastid	59.09	59.85
TraesCSU01G116900.1	Wheat	plastid	60.36	59.18
Os02t0121700-01	Rice	plastid	64.0	59.16
TraesCS7D01G540300.1	Wheat	cytosol, plastid	58.36	59.01
HORVU6Hr1G012110.1	Barley	plastid	61.82	56.38
VIT_00s0372g00060.t01	Wine grape	cytosol	16.36	48.13
GSMUA_Achr2P03420_001	Banana	cytosol	41.45	47.3
Solyc10g005420.1.1	Tomato	cytosol	6.91	46.34
PGSC0003DMT400029275	Potato	cytosol	22.36	45.39
VIT_00s0572g00010.t01	Wine grape	cytosol	36.91	45.11
GSMUA_Achr9P21010_001	Banana	cytosol	39.27	45.09
VIT_00s0271g00030.t01	Wine grape	cytosol	38.91	44.4
VIT_00s0266g00020.t01	Wine grape	cytosol	38.91	43.94
VIT_00s0271g00010.t01	Wine grape	cytosol	39.27	43.9
VIT_00s0372g00020.t01	Wine grape	cytosol	32.18	43.6
PGSC0003DMT400029266	Potato	cytosol	32.18	42.45
VIT_00s0266g00010.t01	Wine grape	cytosol	39.09	42.41
VIT_00s0372g00040.t01	Wine grape	cytosol	39.09	42.41
VIT_00s0572g00020.t01	Wine grape	cytosol	39.09	42.41
VIT_00s0847g00020.t01	Wine grape	cytosol	31.64	42.34
PGSC0003DMT400029354	Potato	cytosol	21.82	41.96
VIT_00s0266g00070.t01	Wine grape	cytosol	38.0	40.43
PGSC0003DMT400029265	Potato	cytosol	36.73	39.38
VIT_00s0385g00020.t01	Wine grape	cytosol	35.82	38.78
VIT_00s0271g00060.t01	Wine grape	cytosol, plastid	39.82	37.95
VIT_00s0385g00010.t01	Wine grape	cytosol, plastid	33.64	37.76
KRH21637	Soybean	cytosol	34.36	35.39
KRH49914	Soybean	plastid	36.73	35.25
Solyc10g005390.2.1	Tomato	cytosol	35.27	34.46
AT1G61680.1	Thale cress	plastid	35.27	34.09
KRH49915	Soybean	plastid	36.0	33.67
VIT_00s0372g00070.t01	Wine grape	cytosol, plasma membrane, plastid	39.27	33.49
Solyc05g026590.1.1	Tomato	cytosol	17.45	33.45
KRH41974	Soybean	cytosol	17.45	32.99
Solyc10g005410.2.1	Tomato	plastid	34.18	29.89
EER92447	Sorghum	plastid	27.09	24.51
OQU81208	Sorghum	mitochondrion, plastid	24.55	23.16
OQU83527	Sorghum	cytosol	10.18	22.05
EES09506	Sorghum	cytosol	20.73	20.77
OQU92401	Sorghum	cytosol	20.55	20.0
KXG34246	Sorghum	cytosol	24.18	18.5

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	UniProt:A0A194YM98	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010333	GO:GO:0016829
GO:GO:0046872	InterPro:IPR008949	InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf	EnsemblPlants:KXG29327	ProteinID:KXG29327
ProteinID:KXG29327.1	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF0	EnsemblPlantsGene:SORBI_3004G019400
SUPFAM:SSF48239	SUPFAM:SSF48576	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd
InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0001C80D82	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:1548120..1551366

Molecular Weight (calculated)

63043.8 Da

IEP (calculated)

5.840

GRAVY (calculated)

-0.187

Length

550 amino acids

Sequence
(BLAST)

001: MVAAPARIIF SFSSVEPLLI AASPAAARNS RQGRHRGQFI RPLAASNTLL GNDFDLQEGL TDVQKILHQR QKSNREMMVT IDNLKRLCVD HYFEEEIESA
101: MSACMNLVHS NDLFDATLAF RLLREAGYDV SAKDDVLWRF TDNSGEFKLP LSKDIRGLLS LHDMSHMNIG GEALLDKAKE FSSKHLASAI RYLEPSLAEY
201: VRQSLDHPYH LSVMPYKARH HLTYLQSLPT RDTAVEKLAI AEFQLNKLLH QKEMQEIKRW WMDLGLAQEI PVVRDQVLKW YMWSMTALQG YSFSRYRVEM
301: TKIISLVYVV DDIFDLVGTL EELSLFTEAV KMWNTAAADS LPSYMRSCYK ALYTITNEIA DMAEKEHGLN PANNLRKAWT VLFDGFMVEA KWLANHQVPT
401: AEDYLRNGVV TSGVPLTFVH IFIMLGCDQN SEALIDHMPS VISCPAKILR LWDDMGSAED ESQEGFDGSY KNFYLMENPR CSPTDAEAHM RSLIAREWEE
501: LNRECLCTRT FSSNFTQVCL NIARMVSVMY SYNKEQRLLV LEDYARMLIL

Best Arabidopsis Sequence Match ( AT1G61680.1 )
(BLAST)

001: MALIATKISS RSCFVSAYPN NSPTFLISKF PNTVDSLSPA NTAKRSILRN VHASVSNPSK QFHNKTSLEY LHELNIKKIK NILSANVDVP SENLEMIDVI
101: QSLGIDLHFR QEIEQTLHMI YKEGLQFNGD LHEIALRFRL LRQEGHYVQE IIFKNILDKK GGFKDVVKND VKGLTELFEA SELRVEGEET LDGAREFTYS
201: RLNELCSGRE SHQKQEIMKS LAQPRHKTVR GLTSKRFTSM IKIAGQEDPE WLQSLLRVAE IDSIRLKSLT QGEMSQTFKW WTELGLEKDV EKARSQPLKW
301: HTWSMKILQD PTLTEQRLDL TKPISLVYVI DDIFDVYGEL EELTIFTRVV ERWDHKGLKT LPKYMRVCFE ALDMITTEIS MKIYKSHGWN PTYALRQSWA
401: SLCKAFLVEA KWFNSGYLPT TEEYMKNGVV SSGVHLVMLH AYILLGEELT KEKVELIESN PGIVSSAATI LRLWDDLGSA KDENQDGTDG SYVECYLNEY
501: KGSTVDEART HVAQKISRAW KRLNRECLNP CPFSRSFSKA CLNIARTVPL MYSYDDDQRL PDEYLKSLM

Arabidopsis Description

TPS14S-(+)-linalool synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84UV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.