Factsheet for HORVU6Hr1G012270.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G092000.1	Wheat	plastid	93.75	93.92
TraesCS7D01G540300.1	Wheat	cytosol, plastid	76.29	76.29
HORVU6Hr1G088610.2	Barley	cytosol, mitochondrion	63.6	67.98
HORVU6Hr1G012090.1	Barley	cytosol	46.88	67.28
EES04391	Sorghum	cytosol	49.82	64.99
HORVU6Hr1G012170.1	Barley	plastid	65.07	64.48
Os10t0489500-00	Rice	cytosol	58.09	61.84
KXG29327	Sorghum	plastid	61.21	60.55
Zm00001d053916_P002	Maize	cytosol	49.26	60.22
Zm00001d053918_P001	Maize	cytosol	31.62	60.14
HORVU6Hr1G012110.1	Barley	plastid	65.26	58.87
EES04390	Sorghum	plastid	60.29	58.16
Os02t0121700-01	Rice	plastid	63.6	58.15
EES04392	Sorghum	plastid	58.82	57.87
EES04394	Sorghum	endoplasmic reticulum	60.29	55.13
Zm00001d015053_P001	Maize	plastid	58.09	54.39
Zm00001d015054_P001	Maize	plastid	56.99	54.01
VIT_00s0372g00060.t01	Wine grape	cytosol	15.62	45.45
PGSC0003DMT400029275	Potato	cytosol	21.88	43.91
Solyc10g005420.1.1	Tomato	cytosol	6.62	43.9
GSMUA_Achr2P03420_001	Banana	cytosol	38.79	43.78
GSMUA_Achr9P21010_001	Banana	cytosol	37.87	43.01
VIT_00s0372g00020.t01	Wine grape	cytosol	31.62	42.36
PGSC0003DMT400029354	Potato	cytosol	22.24	42.31
VIT_00s0271g00030.t01	Wine grape	cytosol	36.95	41.7
VIT_00s0572g00010.t01	Wine grape	cytosol	34.38	41.56
VIT_00s0266g00020.t01	Wine grape	cytosol	37.13	41.48
VIT_00s0271g00010.t01	Wine grape	cytosol	37.5	41.46
VIT_00s0266g00010.t01	Wine grape	cytosol	36.4	39.05
VIT_00s0372g00040.t01	Wine grape	cytosol	36.4	39.05
VIT_00s0572g00020.t01	Wine grape	cytosol	36.4	39.05
VIT_00s0847g00020.t01	Wine grape	cytosol	29.41	38.93
PGSC0003DMT400029266	Potato	cytosol	29.78	38.85
VIT_00s0266g00070.t01	Wine grape	cytosol	35.85	37.72
PGSC0003DMT400029265	Potato	cytosol	34.93	37.04
VIT_00s0385g00020.t01	Wine grape	cytosol	34.01	36.42
VIT_00s0271g00060.t01	Wine grape	cytosol, plastid	38.24	36.05
VIT_00s0385g00010.t01	Wine grape	cytosol, plastid	31.25	34.69
KRH21637	Soybean	cytosol	33.46	34.08
Solyc10g005390.2.1	Tomato	cytosol	34.38	33.21
KRH49914	Soybean	plastid	34.74	32.98
KRH41974	Soybean	cytosol	16.73	31.27
KRH49915	Soybean	plastid	33.64	31.12
Solyc05g026590.1.1	Tomato	cytosol	16.36	31.01
VIT_00s0372g00070.t01	Wine grape	cytosol, plasma membrane, plastid	36.76	31.01
AT1G61680.1	Thale cress	plastid	31.07	29.7
Solyc10g005410.2.1	Tomato	plastid	33.27	28.78
HORVU7Hr1G111960.3	Barley	cytosol, nucleus, peroxisome	26.65	24.53
HORVU2Hr1G003390.1	Barley	plastid	26.65	24.41
HORVU2Hr1G003360.2	Barley	plastid	25.74	24.35
HORVU2Hr1G003420.1	Barley	plastid	25.37	24.34
HORVU7Hr1G122730.1	Barley	cytosol	19.67	21.19
HORVU5Hr1G005860.1	Barley	cytosol	21.51	20.82
HORVU5Hr1G004510.1	Barley	cytosol	7.17	19.31

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	EMBL:AK354441	EMBL:AK359517	UniProt:F2CS39
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0010333	GO:GO:0016829	GO:GO:0046872	EnsemblPlantsGene:HORVU6Hr1G012270	EnsemblPlants:HORVU6Hr1G012270.1	InterPro:IPR008949
InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF0
SUPFAM:SSF48239	SUPFAM:SSF48576	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd
InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI00020045BC	SEG:seg	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CS39]

Coordinates

chrchr6H:+:23633092..23640504

Molecular Weight (calculated)

61782.0 Da

IEP (calculated)

6.016

GRAVY (calculated)

-0.284

Length

544 amino acids

Sequence
(BLAST)

001: MAAHVFSSVE PPLFSPSRVA GDGGGRRRRS FRPCLVATPA RDSHAMADGF DFQEGLKSVK GMLHQNHKEN RKVMTDIDHL KRLCIDHYFQ DEIDDGMDAC
101: LNLVHSDDLL DATLSLRLLR EAGHDISADE VLQKFVNEND DFNLDHTKDI RGLLSLQDIS HLNMGEASLY KANDFSRKHL TSAIKHLDLN LARYVRHSLD
201: HPYHVSLTQY KARHHLSYLQ SLPTRNTAME ELALADFQLN KLQHQMEMQE VKRWWMGLGL AQEIPATRDQ ILKWYMFPMT ILQGQSFSRY RIEITKIIAI
301: VSIVDDIFDV IATQEELSRF TEAIKMWDLA AAASLPSYMR SCYSALYTIT NDIADMAERE HGLNPIDHLK KDWTMLFDAF LLEAKWLSAN QVPSLDDYLS
401: NGVVTTGGPL ALVHLFSMLG HDPTRDATNL TAGCIPPIIS CPSKILRLWD DMGSAKDEAQ DGLDGSYKEL YLKENPGGNA EGHMRALIGS EWEELNRECF
501: SRRAFPPSMT RISLNLARMV RVLFGYGEGQ TLPVLEEYIR MLLL

Best Arabidopsis Sequence Match ( AT1G61680.1 )
(BLAST)

001: MALIATKISS RSCFVSAYPN NSPTFLISKF PNTVDSLSPA NTAKRSILRN VHASVSNPSK QFHNKTSLEY LHELNIKKIK NILSANVDVP SENLEMIDVI
101: QSLGIDLHFR QEIEQTLHMI YKEGLQFNGD LHEIALRFRL LRQEGHYVQE IIFKNILDKK GGFKDVVKND VKGLTELFEA SELRVEGEET LDGAREFTYS
201: RLNELCSGRE SHQKQEIMKS LAQPRHKTVR GLTSKRFTSM IKIAGQEDPE WLQSLLRVAE IDSIRLKSLT QGEMSQTFKW WTELGLEKDV EKARSQPLKW
301: HTWSMKILQD PTLTEQRLDL TKPISLVYVI DDIFDVYGEL EELTIFTRVV ERWDHKGLKT LPKYMRVCFE ALDMITTEIS MKIYKSHGWN PTYALRQSWA
401: SLCKAFLVEA KWFNSGYLPT TEEYMKNGVV SSGVHLVMLH AYILLGEELT KEKVELIESN PGIVSSAATI LRLWDDLGSA KDENQDGTDG SYVECYLNEY
501: KGSTVDEART HVAQKISRAW KRLNRECLNP CPFSRSFSKA CLNIARTVPL MYSYDDDQRL PDEYLKSLM

Arabidopsis Description

TPS14S-(+)-linalool synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84UV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.