Factsheet for Solyc02g079890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007730.1.1	Tomato	cytosol	68.37	66.55
VIT_00s0392g00030.t01	Wine grape	cytosol	27.97	48.27
Solyc01g105940.2.1	Tomato	cytosol	9.14	47.62
VIT_00s0361g00060.t01	Wine grape	cytosol	45.34	43.82
KRH22759	Soybean	cytosol	42.23	40.67
VIT_00s0392g00060.t01	Wine grape	cytosol	30.16	39.38
KRH55947	Soybean	cytosol	22.85	38.7
KRH26550	Soybean	cytosol	28.15	36.67
Solyc01g105850.2.1	Tomato	cytosol	18.1	35.61
Solyc01g105960.2.1	Tomato	cytosol	22.67	35.03
Solyc02g079840.1.1	Tomato	cytosol	34.19	34.76
Solyc01g105920.2.1	Tomato	plastid	36.93	34.12
Solyc01g105860.2.1	Tomato	cytosol	13.53	33.95
TraesCS2B01G031400.1	Wheat	cytosol	16.45	33.46
Solyc01g105900.2.1	Tomato	plastid	32.54	33.27
TraesCS2B01G031300.1	Wheat	cytosol	16.27	33.09
Solyc01g105880.2.1	Tomato	mitochondrion, plastid	35.47	32.88
Zm00001d004279_P001	Maize	mitochondrion	28.7	32.57
Solyc01g105950.2.1	Tomato	extracellular	8.78	31.58
Solyc01g105890.2.1	Tomato	plastid	34.37	30.87
TraesCS2B01G031600.1	Wheat	mitochondrion	29.25	30.77
TraesCS7D01G487700.2	Wheat	cytosol	24.5	30.73
TraesCS2D01G023600.1	Wheat	plastid	31.63	30.3
TraesCS2B01G031000.1	Wheat	plastid	31.44	30.23
TraesCS2D01G023100.1	Wheat	plastid	31.08	30.09
HORVU2Hr1G003360.2	Barley	plastid	31.63	30.09
TraesCS2A01G022600.1	Wheat	plastid	31.63	29.98
TraesCS2B01G032300.2	Wheat	plastid	31.08	29.98
TraesCS2B01G031500.1	Wheat	plastid	29.07	29.83
HORVU2Hr1G003420.1	Barley	plastid	30.9	29.81
TraesCS2A01G022400.1	Wheat	plastid	30.71	29.63
TraesCS2A01G022300.1	Wheat	plastid	32.18	29.58
OQU81208	Sorghum	mitochondrion, plastid	31.44	29.5
TraesCS2B01G031100.1	Wheat	plastid	30.53	29.45
HORVU2Hr1G003390.1	Barley	plastid	31.81	29.29
TraesCS2D01G023800.1	Wheat	plastid	31.08	29.06
Solyc01g105870.2.1	Tomato	plastid	31.99	28.83
HORVU7Hr1G111960.3	Barley	cytosol, nucleus, peroxisome	31.08	28.76
TraesCS7B01G407200.1	Wheat	cytosol	30.35	28.42
TraesCS2B01G030900.1	Wheat	plastid	24.5	28.39
Zm00001d018611_P001	Maize	cytosol, extracellular, mitochondrion, peroxisome	21.94	28.24
EER92447	Sorghum	plastid	30.9	27.8
Solyc01g101220.1.1	Tomato	cytosol	8.41	27.38
TraesCS7A01G500100.1	Wheat	cytosol	30.16	27.27
TraesCSU01G238200.1	Wheat	plastid	19.56	27.23
Solyc01g101190.2.1	Tomato	cytosol	27.42	27.17
Solyc10g005420.1.1	Tomato	cytosol	4.02	26.83
Solyc10g005390.2.1	Tomato	cytosol	23.4	22.74
Solyc05g026590.1.1	Tomato	cytosol	11.7	22.3
KXG34246	Sorghum	cytosol	27.42	20.86
Solyc10g005410.2.1	Tomato	plastid	21.02	18.28

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	GO:GO:0046872
InterPro:IPR008949	InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf	UniProt:K4B9L0	PFAM:PF01397	PFAM:PF03936
PANTHER:PTHR31225	PANTHER:PTHR31225:SF9	SUPFAM:SSF48239	SUPFAM:SSF48576	EnsemblPlantsGene:Solyc02g079890.1	EnsemblPlants:Solyc02g079890.1.1
InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0002768C1C
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:44283595..44286766

Molecular Weight (calculated)

62747.4 Da

IEP (calculated)

6.233

GRAVY (calculated)

-0.244

Length

547 amino acids

Sequence
(BLAST)

001: MACINMVSIA STMQTQKLHS TTEKDSQPER ISTYKPNIWK YDHLLSLTNQ YSEAKYKIEA EKLKEEVGCM FSNTTSPVAQ LQLIDGIDKL GLSAYFEVDT
101: KETLENIILY MKTSSTSKDL YATALCFRLL REHGYHASQD MLKDLFDGKG KLPLDMKTSL ELFEGSHLSI DGENLLNDIR LFSTKNLKNL SLDVDRLTSN
201: PLAWRVRWYD VRKHIITAQN CNDTNPMLLK LAKLNFNIIQ ATHQKDLKDV IRWWRNVSII ENLEFTRERI VESFFFAVGI ASEGEHGSMR KWLAKVIQLI
301: LIIDDVYDIY GTLADVQQFT VAIEKWDPEE VQRLPKSIQI CFGALHDTME DISVEIQRQK GGPSVLPHLK QVWVNFCKAL LVEATWYHKG HIPTLEDYLH
401: NGWTSSSGPL LSLHVILGLT NENLHLCKNC QEIIYYTSLI IRLCNDQGTS TVELERGDVA SSIICYMHQE NVSEDVAREH IESIILNSWE KTNYHFNRLS
501: TSHRKIMKHV INEARMAHVM YLSGDGFGVQ DGETQDQVLI NLVQSII

Best Arabidopsis Sequence Match ( AT2G24210.1 )
(BLAST)

001: MATLLQIGSG VIYSNALRKT LRRPQSSTCI IVTETTPCNK SPTVQRRSAN YQPSRWDHHH LLSVENKFAK DKRVRERDLL KEKVRKMLND EQKTYLDQLE
101: FIDDLQKLGV SYHFEAEIDN ILTSSYKKDR TNIQESDLHA TALEFRLFRQ HGFNVSEDVF DVFMENCGKF DRDDIYGLIS LYEASYLSTK LDKNLQIFIR
201: PFATQQLRDF VDTHSNEDFG SCDMVEIVVQ ALDMPYYWQM RRLSTRWYID VYGKRQNYKN LVVVEFAKID FNIVQAIHQE ELKNVSSWWM ETGLGKQLYF
301: ARDRIVENYF WTIGQIQEPQ YGYVRQTMTK INALLTTIDD IYDIYGTLEE LQLFTVAFEN WDINRLDELP EYMRLCFLVI YNEVNSIACE ILRTKNINVI
401: PFLKKSWTDV SKAYLVEAKW YKSGHKPNLE EYMQNARISI SSPTIFVHFY CVFSDQLSIQ VLETLSQHQQ NVVRCSSSVF RLANDLVTSP DELARGDVCK
501: SIQCYMSETG ASEDKARSHV RQMINDLWDE MNYEKMAHSS SILHHDFMET VINLARMSQC MYQYGDGHGS PEKAKIVDRV MSLLFNPIPL D

Arabidopsis Description

TPS10Tricyclene synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUH4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.