Factsheet for Solyc01g105950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
cytosol 1
extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g105860.2.1	Tomato	cytosol	55.26	38.53
GSMUA_Achr4P07690_001	Banana	cytosol	32.24	28.66
Solyc01g105890.2.1	Tomato	plastid	75.0	18.72
Solyc01g105880.2.1	Tomato	mitochondrion, plastid	66.45	17.12
Solyc01g105900.2.1	Tomato	plastid	53.29	15.14
Solyc01g105920.2.1	Tomato	plastid	56.58	14.53
Solyc01g105870.2.1	Tomato	plastid	52.63	13.18
Solyc02g079840.1.1	Tomato	cytosol	36.18	10.22
Solyc03g007730.1.1	Tomato	cytosol	35.53	9.61
Solyc02g079890.1.1	Tomato	cytosol, plastid	31.58	8.78
Solyc10g005390.2.1	Tomato	cytosol	29.61	7.99
Solyc01g101190.2.1	Tomato	cytosol	25.0	6.88
Solyc10g005410.2.1	Tomato	plastid	21.05	5.09
Solyc01g101220.1.1	Tomato	cytosol	1.97	1.79
Solyc01g105960.2.1	Tomato	cytosol	1.97	0.85
Solyc01g105850.2.1	Tomato	cytosol	0.66	0.36
Solyc10g005420.1.1	Tomato	cytosol	0.0	0.0
Solyc05g026590.1.1	Tomato	cytosol	0.0	0.0
Solyc01g105940.2.1	Tomato	cytosol	0.0	0.0
KRH25917	Soybean	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc01g105950.2.1	EnsemblPlantsGene:Solyc01g105950.2	Gene3D:1.10.600.10	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0010333	GO:GO:0016829	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	InterPro:Terpene_synthase_metal-bd
PANTHER:PTHR31225	PANTHER:PTHR31225:SF16	PFAM:PF03936	SUPFAM:SSF48576	UniParc:UPI0002767521	UniProt:K4B2G4
MapMan:50.4.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:93964875..93967023

Molecular Weight (calculated)

17364.8 Da

IEP (calculated)

6.226

GRAVY (calculated)

-0.324

Length

152 amino acids

Sequence
(BLAST)

001: MDQIPYSMKV CYLALINIIN EVAYDVLKNH DINSYPTLQN HGQICANHTY KKQNGNHNGY KPNLEEYMDN ARISIAVPMI LVHVLVLVTN QITKEALESL
101: TNYPDIIRWS TTIFRLNDDL GTSSDELKRG DVPKSIQCYI SEKNASENIL HL

Best Arabidopsis Sequence Match ( AT2G24210.1 )
(BLAST)

001: MATLLQIGSG VIYSNALRKT LRRPQSSTCI IVTETTPCNK SPTVQRRSAN YQPSRWDHHH LLSVENKFAK DKRVRERDLL KEKVRKMLND EQKTYLDQLE
101: FIDDLQKLGV SYHFEAEIDN ILTSSYKKDR TNIQESDLHA TALEFRLFRQ HGFNVSEDVF DVFMENCGKF DRDDIYGLIS LYEASYLSTK LDKNLQIFIR
201: PFATQQLRDF VDTHSNEDFG SCDMVEIVVQ ALDMPYYWQM RRLSTRWYID VYGKRQNYKN LVVVEFAKID FNIVQAIHQE ELKNVSSWWM ETGLGKQLYF
301: ARDRIVENYF WTIGQIQEPQ YGYVRQTMTK INALLTTIDD IYDIYGTLEE LQLFTVAFEN WDINRLDELP EYMRLCFLVI YNEVNSIACE ILRTKNINVI
401: PFLKKSWTDV SKAYLVEAKW YKSGHKPNLE EYMQNARISI SSPTIFVHFY CVFSDQLSIQ VLETLSQHQQ NVVRCSSSVF RLANDLVTSP DELARGDVCK
501: SIQCYMSETG ASEDKARSHV RQMINDLWDE MNYEKMAHSS SILHHDFMET VINLARMSQC MYQYGDGHGS PEKAKIVDRV MSLLFNPIPL D

Arabidopsis Description

TPS10Tricyclene synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUH4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.