Factsheet for Solyc01g105860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g105950.2.1	Tomato	extracellular	38.53	55.26
GSMUA_Achr4P07690_001	Banana	cytosol	33.95	43.27
Solyc01g105870.2.1	Tomato	plastid	73.39	26.36
Solyc01g105880.2.1	Tomato	mitochondrion, plastid	69.72	25.76
PGSC0003DMT400015998	Potato	plastid	65.14	24.44
Solyc01g105900.2.1	Tomato	plastid	59.17	24.11
Solyc01g105920.2.1	Tomato	plastid	64.68	23.82
Solyc01g105890.2.1	Tomato	plastid	63.3	22.66
Solyc02g079840.1.1	Tomato	cytosol	46.79	18.96
Solyc03g007730.1.1	Tomato	cytosol	38.07	14.77
Solyc02g079890.1.1	Tomato	cytosol, plastid	33.95	13.53
Solyc10g005390.2.1	Tomato	cytosol	29.82	11.55
Solyc01g101190.2.1	Tomato	cytosol	27.98	11.05
Solyc10g005410.2.1	Tomato	plastid	25.69	8.9
Solyc01g101220.1.1	Tomato	cytosol	1.38	1.79
Solyc01g105960.2.1	Tomato	cytosol	1.38	0.85
Solyc01g105850.2.1	Tomato	cytosol	0.92	0.72
Solyc05g026590.1.1	Tomato	cytosol	0.46	0.35
Solyc10g005420.1.1	Tomato	cytosol	0.0	0.0
Solyc01g105940.2.1	Tomato	cytosol	0.0	0.0
KRH25917	Soybean	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc01g105860.2.1	EnsemblPlantsGene:Solyc01g105860.2	Gene3D:1.10.600.10	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	GO:GO:0046872
InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf	InterPro:Terpene_synthase_metal-bd	PANTHER:PTHR31225	PANTHER:PTHR31225:SF16	PFAM:PF03936
SUPFAM:SSF48576	UniParc:UPI000276915C	UniProt:K4B2F6	MapMan:50.4.2	:	:

Description

No Description!

Coordinates

chr1:+:93885382..93886419

Molecular Weight (calculated)

24924.9 Da

IEP (calculated)

5.947

GRAVY (calculated)

-0.194

Length

218 amino acids

Sequence
(BLAST)

001: MKICYLALFN TTTEIVYEVL KEQGINVVIY LTKSWSDLCK SYLREARWYH SGYKPSLEEY MENGWITIGA PVVLVHTLFL VTNPITKEAL ESLTSYPDII
101: QCSATIIRLT DDLGTSSDEM ERGDVPKSIQ CYMNEKGVSE EDARKHINLL IKETWKLMNT ALQKENSLFS ETFIACAVNG ARTSHTIYQH GDGYGIQNLH
201: TKNRIRQLFF EPITISIP

Best Arabidopsis Sequence Match ( AT2G24210.1 )
(BLAST)

001: MATLLQIGSG VIYSNALRKT LRRPQSSTCI IVTETTPCNK SPTVQRRSAN YQPSRWDHHH LLSVENKFAK DKRVRERDLL KEKVRKMLND EQKTYLDQLE
101: FIDDLQKLGV SYHFEAEIDN ILTSSYKKDR TNIQESDLHA TALEFRLFRQ HGFNVSEDVF DVFMENCGKF DRDDIYGLIS LYEASYLSTK LDKNLQIFIR
201: PFATQQLRDF VDTHSNEDFG SCDMVEIVVQ ALDMPYYWQM RRLSTRWYID VYGKRQNYKN LVVVEFAKID FNIVQAIHQE ELKNVSSWWM ETGLGKQLYF
301: ARDRIVENYF WTIGQIQEPQ YGYVRQTMTK INALLTTIDD IYDIYGTLEE LQLFTVAFEN WDINRLDELP EYMRLCFLVI YNEVNSIACE ILRTKNINVI
401: PFLKKSWTDV SKAYLVEAKW YKSGHKPNLE EYMQNARISI SSPTIFVHFY CVFSDQLSIQ VLETLSQHQQ NVVRCSSSVF RLANDLVTSP DELARGDVCK
501: SIQCYMSETG ASEDKARSHV RQMINDLWDE MNYEKMAHSS SILHHDFMET VINLARMSQC MYQYGDGHGS PEKAKIVDRV MSLLFNPIPL D

Arabidopsis Description

TPS10Tricyclene synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUH4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.