Factsheet for Solyc01g105870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g105850.2.1	Tomato	cytosol	34.6	75.54
Solyc01g105860.2.1	Tomato	cytosol	26.36	73.39
Solyc01g105940.2.1	Tomato	cytosol	11.04	63.81
Solyc01g105920.2.1	Tomato	plastid	57.99	59.46
Solyc01g105880.2.1	Tomato	mitochondrion, plastid	57.0	58.64
Solyc01g105900.2.1	Tomato	plastid	49.26	55.89
Solyc01g105890.2.1	Tomato	plastid	54.7	54.52
Solyc01g105950.2.1	Tomato	extracellular	13.18	52.63
Solyc01g105960.2.1	Tomato	cytosol	28.34	48.59
Solyc02g079840.1.1	Tomato	cytosol	42.34	47.77
GSMUA_Achr4P07690_001	Banana	cytosol	12.36	43.86
Solyc01g101220.1.1	Tomato	cytosol	10.71	38.69
Solyc10g005420.1.1	Tomato	cytosol	4.61	34.15
Solyc01g101190.2.1	Tomato	cytosol	30.64	33.7
Solyc02g079890.1.1	Tomato	cytosol, plastid	28.83	31.99
Solyc03g007730.1.1	Tomato	cytosol	29.49	31.85
Solyc05g026590.1.1	Tomato	cytosol	14.83	31.36
KRH25917	Soybean	plastid	13.84	29.79
Solyc10g005390.2.1	Tomato	cytosol	26.69	28.77
Solyc10g005410.2.1	Tomato	plastid	25.86	24.96

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	ProteinID:AEM05853.1	UniProt:G1JUH1	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0010333	GO:GO:0016114	GO:GO:0016829	GO:GO:0046872
GO:GO:0050551	GO:GO:0050552	GO:GO:0102701	GO:GO:0102703	InterPro:IPR008949	InterPro:IPR036965
InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF16	SUPFAM:SSF48239
SUPFAM:SSF48576	EnsemblPlantsGene:Solyc01g105870.2	EnsemblPlants:Solyc01g105870.2.1	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf
InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI00021D5FE5	SEG:seg	:	:

Description

TPS3(-)-camphene/tricyclene synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:G1JUH1]

Coordinates

chr1:+:93890902..93894805

Molecular Weight (calculated)

70655.9 Da

IEP (calculated)

6.556

GRAVY (calculated)

-0.326

Length

607 amino acids

Sequence
(BLAST)

001: MSIFSTRYLV TPFSSFSPPK AFVSKACSLS TGQPLNYSPN ISTNIISSSN GIINPIRRSG NYEPTMWNYE YIQSTHNHHV GEKYMKRFNE LKAEMKKHLM
101: MMLHEESQEL EKLELIDNLQ RLGVSYHFKD EIIQILRSIH DQSSSEATSA NSLYYTALKF RILRQHGFYI SQDILNDFKD EQGHFKQSLC KDTKGLLQLY
201: EASFLSTKSE TSTLLESANT FAMSHLKNYL NGGDEENNWM VKLVRHALEV PLHCMMLRVE TRWYIDIYEN IPNANPLLIE LAKLDFNFVQ AMHQQELRNL
301: SRWWKKSMLA EKLPFARDRI VEAFQWITGM IFESQENEFC RIMLTKVTAM ATVIDDIYDV YGTLDELEIF THAIQRMEIK AMDELPHYMK LCYLALFNTS
401: SEIAYQVLKE QGINIMPYLT KSWADLSKSY LQEARWYYSG YTPSLDEYME NAWISVGSLV MVVNAFFLVT NPITKEVLEY LFSNKYPDII RWPATIIRLT
501: DDLATSSNEM KRGDVPKSIQ CYMKENGASE EEARKHINLM IKETWKMINT AQHDNSLFCE KFMGCAVNIA RTGQTIYQHG DGHGIQNYKI QNRISKLFFE
601: PITISMP

Best Arabidopsis Sequence Match ( AT3G25810.1 )
(BLAST)

001: MATLCIGSAP IYQNACIHNF RLQRPRRFIS KSMTKTMPDA NPLDLRRRSG NYQPSSWDHS YLLSIENKYV NEKEVITRHV LKKKVKKMLE EVETKSRLEK
101: LELIDDLQKL GVSYHFEQEI NNILTNFHLE NGKNIWKCDK EEDLHATALE FRLLRQHGFG VSEDIFDVII DKIESNTFKS DNITSIITLY EASYLSTKSD
201: TKLHKVIRPF ATEQIRNFVD DESETYNIML REMAIHALEI PYHWRMRRLE TRWYIDAYEK KHDMNLFLAE FAKIDFNIVQ TAHQEDVKYV SCWWKETGLG
301: SQLHFVRDRI VENYFWTVGM IYEPQFGYIR RIVAIVAALI TVIDDIYDIY GTPEELELFT AMVQNWDINR LDELPEYMKL CFLTLFNEIN AMGCDVLKCK
401: NIDVIPYFKK SWADLCKAYL VEAKWYKGGY KPSVEEYMQN AWISISAPTM LIHFYCAFSG QISVQILESL VQQQQDVVRC SATVLRLAND LATSPDELAR
501: GDVLKSVQCY MHETGVSEEE ARTHVQQMIS HTWDEMNYEA RTAARSSSLL SRRFVETAMN LARMSQCMYQ HGDGHGCPDK AKIVDRVQTL LVDPIPLD

Arabidopsis Description

TPS24Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.