Factsheet for PGSC0003DMT400062798

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075074	Potato	cytosol	47.01	30.29
PGSC0003DMT400089009	Potato	cytosol	35.07	29.19
PGSC0003DMT400050941	Potato	cytosol	48.51	26.0
PGSC0003DMT400047124	Potato	cytosol	48.51	20.9
VIT_18s0001g04200.t01	Wine grape	cytosol	16.42	18.49
Os02t0458100-01	Rice	plastid	44.78	15.35
PGSC0003DMT400079785	Potato	cytosol	34.33	14.79
PGSC0003DMT400070310	Potato	cytosol	34.33	14.79
PGSC0003DMT400055897	Potato	cytosol	12.69	14.05
PGSC0003DMT400029354	Potato	cytosol	24.63	11.54
PGSC0003DMT400067594	Potato	cytosol	19.4	10.7
PGSC0003DMT400015998	Potato	plastid	46.27	10.67
VIT_18s0001g05460.t01	Wine grape	cytosol, mitochondrion	23.88	10.32
PGSC0003DMT400029265	Potato	cytosol	34.33	8.97
VIT_18s0001g05430.t01	Wine grape	cytosol	32.09	8.92
KRG93110	Soybean	mitochondrion	19.4	8.78
VIT_18s0001g04510.t01	Wine grape	plastid	19.4	8.5
PGSC0003DMT400029275	Potato	cytosol	14.18	7.01
PGSC0003DMT400029266	Potato	cytosol	20.15	6.47
PGSC0003DMT400095524	Potato	cytosol	14.18	4.32
GSMUA_Achr6P24340_001	Banana	cytosol	0.0	0.0
GSMUA_Achr6P24330_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	InterPro:IPR008949
InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf	UniProt:M1C9J8	PFAM:PF03936	EnsemblPlantsGene:PGSC0003DMG400024442	PGSC:PGSC0003DMG400024442
EnsemblPlants:PGSC0003DMT400062798	PANTHER:PTHR31225	PANTHER:PTHR31225:SF22	SUPFAM:SSF48576	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd
UniParc:UPI000295A7FB	:	:	:	:	:

Description

Sesquiterpene synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400024442]

Coordinates

chr7:-:46284657..46286271

Molecular Weight (calculated)

15892.2 Da

IEP (calculated)

8.045

GRAVY (calculated)

-0.224

Length

134 amino acids

Sequence
(BLAST)

001: MQVSYALKYP INKIIARVAT RKHTSFYQED KSCDQVLLNF AKLDFNTLQR MHKRELCDIT RWWKELNLAN ELPFAKDRVV ELYFWSLGVY FEPQYNVARN
101: ILTKVLCFAS ITDDIYDTYG TLHELTLLTN AIEK

Best Arabidopsis Sequence Match ( AT5G23960.2 )
(BLAST)

001: MGSEVNRPLA DFPANIWEDP LTSFSKSDLG TETFKEKHST LKEAVKEAFM SSKANPIENI KFIDALCRLG VSYHFEKDIV EQLDKSFDCL DFPQMVRQEG
101: CDLYTVGIIF QVFRQFGFKL SADVFEKFKD ENGKFKGHLV TDAYGMLSLY EAAQWGTHGE DIIDEALAFS RSHLEEISSR SSPHLAIRIK NALKHPYHKG
201: ISRIETRQYI SYYEEEESCD PTLLEFAKID FNLLQILHRE ELACVTRWHH EMEFKSKVTY TRHRITEAYL WSLGTYFEPQ YSQARVITTM ALILFTALDD
301: MYDAYGTMEE LELFTDAMDE YSICNIIPIP DSMKFIYNVT VEFYDKLDEE LEKEGRSGCG FHLKKSLQKT ANGYMQEAKW LKKDYIATFD EYKENAILSS
401: GYYALIAMTF VRMTDVAKLD AFEWLSSHPK IRVASEIISR FTDDISSYEF EHKREHVATG IDCYMQQFGV SKERAVEVMG NIVSDAWKDL NQELMRPHVF
501: PFPLLMRVLN LSRVIDVFYR YQDAYTNPKL LKEHIVSLLI ETIPI

Arabidopsis Description

TPS21Alpha-humulene/(-)-(E)-beta-caryophyllene synthase [Source:UniProtKB/Swiss-Prot;Acc:Q84UU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.