Factsheet for AT1G48800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G48820.1	Thale cress	mitochondrion, plastid	69.15	74.33
Bra027609.1-P	Field mustard	cytosol	34.99	73.26
CDY23121	Canola	cytosol	45.11	71.58
CDY13053	Canola	extracellular	64.84	70.71
AT4G20200.1	Thale cress	plastid	55.39	55.3
AT1G66020.1	Thale cress	plastid	54.06	54.52
AT3G29110.1	Thale cress	plastid	52.57	53.28
AT4G20210.1	Thale cress	plastid	52.4	52.67
AT4G20230.2	Thale cress	plastid	54.06	52.67
AT3G29190.1	Thale cress	plastid	51.91	52.08
AT4G15870.1	Thale cress	plastid	48.09	48.49
AT5G44630.1	Thale cress	cytosol	43.28	46.86
AT4G13300.1	Thale cress	cytosol	40.96	44.58
AT2G23230.2	Thale cress	plastid	44.78	44.19
AT4G13280.2	Thale cress	cytosol	40.46	44.04
AT1G70080.1	Thale cress	mitochondrion	43.12	42.55
AT5G48110.1	Thale cress	plastid	23.05	41.0
AT3G14490.1	Thale cress	plastid	37.48	37.6
AT3G14520.1	Thale cress	plastid	36.82	36.69
AT1G33750.1	Thale cress	mitochondrion, plastid	36.65	36.65
AT3G14540.1	Thale cress	plastid	35.99	36.05
PGSC0003DMT400050941	Potato	cytosol	14.93	36.0
AT3G32030.1	Thale cress	plastid	35.66	35.6
AT1G31950.3	Thale cress	cytosol, endoplasmic reticulum, mitochondrion, plastid, vacuole	35.82	35.53
AT3G29410.1	Thale cress	plastid	35.49	35.49
VIT_18s0001g04200.t01	Wine grape	cytosol	6.8	34.45
PGSC0003DMT400070310	Potato	cytosol	16.92	32.8
PGSC0003DMT400075074	Potato	cytosol	11.28	32.69
PGSC0003DMT400079785	Potato	cytosol	16.25	31.51
Solyc01g101190.2.1	Tomato	cytosol	28.36	30.98
Os02t0458100-01	Rice	plastid	19.4	29.92
PGSC0003DMT400047124	Potato	cytosol	14.59	28.3
VIT_18s0001g04510.t01	Wine grape	plastid	14.26	28.1
Solyc01g101220.1.1	Tomato	cytosol	7.63	27.38
VIT_18s0001g05460.t01	Wine grape	cytosol, mitochondrion	13.93	27.1
GSMUA_Achr6P24330_001	Banana	cytosol	5.8	24.82
GSMUA_Achr6P24340_001	Banana	cytosol	5.97	24.16
AT4G16730.1	Thale cress	cytosol	21.39	23.93
AT2G24210.1	Thale cress	plastid	23.38	23.86
AT4G16740.1	Thale cress	mitochondrion	21.06	22.48
AT3G25820.1	Thale cress	plastid	22.22	22.33
AT3G25830.1	Thale cress	plastid	22.22	22.33
KRG93110	Soybean	mitochondrion	10.95	22.3
AT3G25810.1	Thale cress	plastid	21.56	21.74
AT1G61680.1	Thale cress	plastid	19.9	21.09
VIT_18s0001g05430.t01	Wine grape	cytosol	15.92	19.92

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	EntrezGene:841302	MapMan:9.1.4.2	ProteinID:AAG60132.1	ProteinID:AEE32351.1
ArrayExpress:AT1G48800	EnsemblPlantsGene:AT1G48800	RefSeq:AT1G48800	TAIR:AT1G48800	RefSeq:AT1G48800-TAIR-G	EnsemblPlants:AT1G48800.1
TAIR:AT1G48800.1	EMBL:DQ446343	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010333	GO:GO:0016114	GO:GO:0016829
GO:GO:0046872	InterPro:IPR008949	InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf	RefSeq:NP_175312.1	PFAM:PF01397
PFAM:PF03936	PO:PO:0000039	PO:PO:0000115	PO:PO:0000146	PO:PO:0003011	PO:PO:0004724
PO:PO:0009067	PO:PO:0020030	PANTHER:PTHR31045	PANTHER:PTHR31045:SF4	UniProt:Q9C748	SUPFAM:SSF48239
SUPFAM:SSF48576	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase
UniParc:UPI000004835A	SEG:seg	:	:	:	:

Description

TPS28Terpenoid synthase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9C748]

Coordinates

chr1:+:18049810..18053152

Molecular Weight (calculated)

69660.1 Da

IEP (calculated)

6.659

GRAVY (calculated)

-0.255

Length

603 amino acids

Sequence
(BLAST)

001: MEAIRVFGPK LGSRLSIRSH TTAFPACKLS RFPLTSFPGK HAHLVLLKAT TIPLASGDKE NNRKFEKLGP SEWGNQFLFA HVDLSEMDAL EREIEALKPK
101: VRDMFMSFKG MKSNKKNLFL IYLLVSLGLA HHFEDEIEES VKGCSQEMVE MMDGENDLYT VSIIFWVFRT YGHNISSDIF NRFKGHNGKF KECLATDAKG
201: ILSLYEAAHM GTTTDYILDE ALSFTLSYLE SLAANGTCKP NLVRRIRNAL GLLQNKNVEI LVAKEYIRFY EQEEDCDKTI LEFSMLNLKF LQLHYLQELK
301: LLTKWYKEQD FESKLPPYYR DRIVELHLAT LAYINPKYSR VRIILTMIYT IQIILDDTCD RYASLREVES LAATIERWDH NDHAMEGLPD YLKSVAKFIF
401: HTFQEFEREV SSESGGSYSL KATIEDCKRM MRSNLQLAKW AVTGHLPSFD EYLDVAGVEI AVYFTVAGIL LGMENINKKE AYEWLIFRDK LVRAMSTKAR
501: LVNDLFGYKD DMRRGYVTNS INCYKKQYGV TEEEAFRKLH QMVADGDKMM NEEFLKPINV PHQVLKAVLD TLRAINICYD NEDGFTRLNG NLKNYITSMY
601: VDL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.