Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G13280.2 | Thale cress | cytosol | 91.34 | 91.34 |
| CDY14934 | Canola | cytosol | 2.53 | 87.5 |
| AT5G44630.1 | Thale cress | cytosol | 56.68 | 56.37 |
| AT4G15870.1 | Thale cress | plastid | 47.83 | 44.31 |
| AT3G29190.1 | Thale cress | plastid | 47.29 | 43.59 |
| AT1G66020.1 | Thale cress | plastid | 46.03 | 42.64 |
| AT2G23230.2 | Thale cress | plastid | 46.39 | 42.06 |
| AT4G20200.1 | Thale cress | plastid | 45.85 | 42.05 |
| AT4G20210.1 | Thale cress | plastid | 45.13 | 41.67 |
| AT5G48110.1 | Thale cress | plastid | 25.27 | 41.3 |
| AT4G20230.2 | Thale cress | plastid | 45.85 | 41.03 |
| AT1G48800.1 | Thale cress | mitochondrion, plastid | 44.58 | 40.96 |
| VIT_18s0001g04200.t01 | Wine grape | cytosol | 8.66 | 40.34 |
| AT3G29110.1 | Thale cress | plastid | 43.32 | 40.34 |
| AT1G48820.1 | Thale cress | mitochondrion, plastid | 40.43 | 39.93 |
| AT1G70080.1 | Thale cress | mitochondrion | 42.24 | 38.3 |
| AT3G14490.1 | Thale cress | plastid | 41.52 | 38.27 |
| AT1G31950.3 | Thale cress | cytosol, endoplasmic reticulum, mitochondrion, plastid, vacuole | 40.43 | 36.84 |
| PGSC0003DMT400050941 | Potato | cytosol | 16.61 | 36.8 |
| AT3G32030.1 | Thale cress | plastid | 39.89 | 36.59 |
| AT3G14540.1 | Thale cress | plastid | 39.71 | 36.54 |
| AT3G14520.1 | Thale cress | plastid | 39.71 | 36.36 |
| AT3G29410.1 | Thale cress | plastid | 38.09 | 34.99 |
| PGSC0003DMT400075074 | Potato | cytosol | 12.82 | 34.13 |
| AT1G33750.1 | Thale cress | mitochondrion, plastid | 36.82 | 33.83 |
| Solyc01g101190.2.1 | Tomato | cytosol | 30.87 | 30.98 |
| PGSC0003DMT400070310 | Potato | cytosol | 16.97 | 30.23 |
| PGSC0003DMT400079785 | Potato | cytosol | 16.61 | 29.58 |
| Solyc01g101220.1.1 | Tomato | cytosol | 8.84 | 29.17 |
| PGSC0003DMT400047124 | Potato | cytosol | 15.7 | 27.97 |
| VIT_18s0001g05460.t01 | Wine grape | cytosol, mitochondrion | 15.16 | 27.1 |
| Os02t0458100-01 | Rice | plastid | 18.59 | 26.34 |
| AT4G16730.1 | Thale cress | cytosol | 24.73 | 25.42 |
| VIT_18s0001g04510.t01 | Wine grape | plastid | 13.72 | 24.84 |
| AT4G16740.1 | Thale cress | mitochondrion | 23.65 | 23.19 |
| AT1G61680.1 | Thale cress | plastid | 23.47 | 22.85 |
| KRG93110 | Soybean | mitochondrion | 12.09 | 22.64 |
| AT2G24210.1 | Thale cress | plastid | 23.65 | 22.17 |
| AT3G25810.1 | Thale cress | plastid | 23.83 | 22.07 |
| AT3G25830.1 | Thale cress | plastid | 23.83 | 22.0 |
| AT3G25820.1 | Thale cress | plastid | 23.83 | 22.0 |
| VIT_18s0001g05430.t01 | Wine grape | cytosol | 16.61 | 19.09 |
| GSMUA_Achr6P24330_001 | Banana | cytosol | 4.51 | 17.73 |
| GSMUA_Achr6P24340_001 | Banana | cytosol | 4.33 | 16.11 |
Protein Annotations
| Gene3D:1.10.600.10 | Gene3D:1.50.10.130 | EntrezGene:826960 | MapMan:9.1.4.2 | ProteinID:AEE83260.1 | ArrayExpress:AT4G13300 |
| EnsemblPlantsGene:AT4G13300 | RefSeq:AT4G13300 | TAIR:AT4G13300 | RefSeq:AT4G13300-TAIR-G | EnsemblPlants:AT4G13300.1 | TAIR:AT4G13300.1 |
| Symbol:ATTPS13 | Unigene:At.54302 | ProteinID:CAB40765.1 | ProteinID:CAB78372.1 | ncoils:Coil | GO:GO:0000287 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006629 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009611 | GO:GO:0009975 | GO:GO:0009987 | GO:GO:0010333 | GO:GO:0016106 | GO:GO:0016114 |
| GO:GO:0016829 | GO:GO:0045338 | GO:GO:0046872 | GO:GO:0052683 | InterPro:IPR008949 | InterPro:IPR036965 |
| InterPro:Isoprenoid_synthase_dom_sf | RefSeq:NP_193066.4 | PFAM:PF01397 | PFAM:PF03936 | PO:PO:0000258 | PO:PO:0005660 |
| PO:PO:0009073 | PANTHER:PTHR31225 | PANTHER:PTHR31225:SF22 | UniProt:Q9T0K1 | SUPFAM:SSF48239 | SUPFAM:SSF48576 |
| InterPro:Terpene_synth_N | InterPro:Terpene_synth_N_sf | InterPro:Terpene_synthase_metal-bd | InterPro:Terpenoid_cyclase/PrenylTrfase | UniParc:UPI0000EC9D39 | SEG:seg |
Description
TPS13(Z)-gamma-bisabolene synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0K1]
Coordinates
chr4:-:7742871..7746394
Molecular Weight (calculated)
64148.5 Da
IEP (calculated)
5.344
GRAVY (calculated)
-0.162
Length
554 amino acids
Sequence
(BLAST)
(BLAST)
001: MESQTKFDYE SLAFTKLSHS QWTDYFLSVP IDDSELDAIT REIDIIKPEV RKLLSSKGDD ETSKRKVLLI QSLLSLGLAF HFENEIKDIL EDAFRRIDDI
101: TGDENDLSTI SIMFRVFRTY GHNLPSSVFK RFTGDDGKFE RSLTEDAKGI LSLYEAAHLG TTTDYILDEA LEFTSSHLKS LLVGGMCRPH ILRLIRNTLY
201: LPQRWNMEAV IAREYISFYE QEEDHDKMLL RLAKLNFKLL QLHYIKELKT FIKWWMELGL TSKWPSQFRE RIVEAWLAGL MMYFEPQFSG GRVIAAKFNY
301: LLTILDDACD HYFSIPELTR LVDCVERWNH DGIHTLEDIS RIIFKLALDV FDDIGRGVRS KGCSYYLKEM LEELKILVRA NLDLVKWARG NQLPSFEEHV
401: EVGGIALTTY ATLMYSFVGM GEAVGKEAYE WVRSRPRLIK SLAAKGRLMD DITDFESDMS NGFAANAINY YMKQFVVTKE EAILECQKMV VDINKIVNEE
501: LLKTTTVPRR VLKQALNFGR LLEVLYTKSD DIYNCSEGKL KEYIVTLLID PIHL
101: TGDENDLSTI SIMFRVFRTY GHNLPSSVFK RFTGDDGKFE RSLTEDAKGI LSLYEAAHLG TTTDYILDEA LEFTSSHLKS LLVGGMCRPH ILRLIRNTLY
201: LPQRWNMEAV IAREYISFYE QEEDHDKMLL RLAKLNFKLL QLHYIKELKT FIKWWMELGL TSKWPSQFRE RIVEAWLAGL MMYFEPQFSG GRVIAAKFNY
301: LLTILDDACD HYFSIPELTR LVDCVERWNH DGIHTLEDIS RIIFKLALDV FDDIGRGVRS KGCSYYLKEM LEELKILVRA NLDLVKWARG NQLPSFEEHV
401: EVGGIALTTY ATLMYSFVGM GEAVGKEAYE WVRSRPRLIK SLAAKGRLMD DITDFESDMS NGFAANAINY YMKQFVVTKE EAILECQKMV VDINKIVNEE
501: LLKTTTVPRR VLKQALNFGR LLEVLYTKSD DIYNCSEGKL KEYIVTLLID PIHL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.