CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90197	Soybean	plastid	77.24	76.73
KRH36347	Soybean	cytosol	27.41	73.66
KRG93110	Soybean	mitochondrion	29.07	59.12
KRH25425	Soybean	cytosol	32.72	52.39
KRH56086	Soybean	plastid	48.51	48.91
KRH25428	Soybean	plastid	47.67	47.67
KRH22499	Soybean	cytosol	16.45	43.42
KRH22759	Soybean	cytosol	34.88	36.97
KRH26850	Soybean	nucleus, plastid	33.55	35.56
KRH26852	Soybean	plastid	34.39	35.45
KRH22502	Soybean	cytosol	10.3	35.43
KRH22498	Soybean	plastid	33.72	35.06
KRH41974	Soybean	cytosol	16.94	35.05
KRH26550	Soybean	cytosol	24.09	34.52
KRH55947	Soybean	cytosol	17.61	32.82
KRH21637	Soybean	cytosol	29.07	32.77
KRH25917	Soybean	plastid	15.12	32.27
KRH49915	Soybean	plastid	31.23	31.97
KRH49914	Soybean	plastid	29.9	31.41

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	EntrezGene:100801629	MapMan:9.1.4.2	EMBL:ACUP02005767	ncoils:Coil
EnsemblPlantsGene:GLYMA_09G122500	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	GO:GO:0046872	InterPro:IPR008949	InterPro:IPR036965
InterPro:Isoprenoid_synthase_dom_sf	UniProt:K7LDG0	EnsemblPlants:KRH38260	ProteinID:KRH38260	ProteinID:KRH38260.1	PFAM:PF01397
PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF5	SUPFAM:SSF48239	SUPFAM:SSF48576	InterPro:Terpene_cyclase_like_1_C
InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI000296398A	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:29418652..29426826

Molecular Weight (calculated)

69490.9 Da

IEP (calculated)

6.356

GRAVY (calculated)

-0.408

Length

602 amino acids

Sequence
(BLAST)

001: MATVFLCLSN QFSSPKPTTP RFSQSKNFMY QTSLANPNPW QVICAMSSQF TQMTQHNGRR SANYQQSHWK FEFLQCLGND VKHVQMENLE ERARKVEEEV
101: RRMINGADTE ALRLLELIDE IQRLGLTYKF EKDIFKALEK TISLDENEKH ISGLHATALS FRLLRQHGFE VSQDVFKRFK DKEGGFINEL KGDMQGLLSL
201: YEASYLGFEG ETLLDEARAY SITHLKNNLK VGVNTEVKEQ VSHALELPYH RGLNRLEARW FLEKYEPNES HHHVLLELAK IDFNLVQVMY QKELRELSRW
301: WSEMGLTSKL KFVRDRLMEV YFWVLGMAPR PQFSECRKAV TKTFALIGII DDVYDVYGTL DELQLFTDAI ERWDVNAMNT LPDYMKLCYL AVYNTVNDTC
401: YSTLKAKGHN NMSYLTKSWC ELCKAFLQEA KWSNNKIVPT FSKYLENASV SSSGMALLTA SYFSVCQQQD ISNQQALCSL TNFQGLVRSS SNIFRLCNDL
501: ATSAAELETG ETANSITCYM HEKDTSEEQA REELTNLIDA EWKKMNREFV SNSTLPKAFK EIAINMARVS HCMYQYEDGL GRPGYTTENK IKLLLIDPVP
601: IN

Best Arabidopsis Sequence Match ( AT4G16740.1 )
(BLAST)

001: MPKRQAQRRF TRKTDSKTPS QPLVSRRSAN YQPSLWQHEY LLSLGNTYVK EDNVERVTLL KQEVSKMLNE TEGLLEQLEL IDTLQRLGVS YHFEQEIKKT
101: LTNVHVKNVR AHKNRIDRNR WGDLYATALE FRLLRQHGFS IAQDVFDGNI GVDLDDKDIK GILSLYEASY LSTRIDTKLK ESIYYTTKRL RKFVEVNKNE
201: TKSYTLRRMV IHALEMPYHR RVGRLEARWY IEVYGERHDM NPILLELAKL DFNFVQAIHQ DELKSLSSWW SKTGLTKHLD FVRDRITEGY FSSVGVMYEP
301: EFAYHRQMLT KVFMLITTID DIYDIYGTLE ELQLFTTIVE KWDVNRLEEL PNYMKLCFLC LVNEINQIGY FVLRDKGFNV IPYLKESWAD MCTTFLKEAK
401: WYKSGYKPNF EEYMQNGWIS SSVPTILLHL FCLLSDQTLD ILGSYNHSVV RSSATILRLA NDLATSSEEL ARGDTMKSVQ CHMHETGASE AESRAYIQGI
501: IGVAWDDLNM EKKSCRLHQG FLEAAANLGR VAQCVYQYGD GHGCPDKAKT VNHVRSLLVH PLPLN

Arabidopsis Description

TPS03Tricyclene synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A4FVP2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.