Factsheet for VIT_02s0025g04620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0015g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	VIT_19s0015g00430.t01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080130.2.1	Tomato	nucleus	74.59	74.94
PGSC0003DMT400058531	Potato	plastid	74.59	74.68
CDY41006	Canola	mitochondrion	13.65	74.36
CDY13283	Canola	mitochondrion	29.76	71.67
KRH77467	Soybean	nucleus	71.88	71.63
TraesCS1B01G195200.1	Wheat	cytosol	67.53	70.86
TraesCS1D01G189300.1	Wheat	cytosol	67.41	70.74
CDY28756	Canola	cytosol, extracellular	10.47	70.63
Bra022740.1-P	Field mustard	cytosol, extracellular	10.47	70.63
CDX86742	Canola	cytosol	69.29	69.54
Bra014871.1-P	Field mustard	cytosol	69.18	69.42
GSMUA_Achr8P12030_001	Banana	plastid	65.65	69.4
AT4G11850.1	Thale cress	cytosol	70.0	69.35
Bra000752.1-P	Field mustard	cytosol, nucleus, peroxisome	42.0	67.87
AT4G11840.1	Thale cress	cytosol	68.0	66.74
AT4G11830.2	Thale cress	cytosol	67.18	66.71
TraesCS1B01G382600.1	Wheat	mitochondrion	64.82	66.55
TraesCS1D01G370600.1	Wheat	cytosol	64.35	66.06
TraesCS1A01G365100.2	Wheat	mitochondrion	64.35	66.06
CDX90807	Canola	cytosol	62.59	65.92
KRH77469	Soybean	nucleus	5.41	65.71
KXG40331	Sorghum	cytosol	63.65	65.5
HORVU1Hr1G079150.1	Barley	cytosol	63.41	65.1
Os03t0119100-01	Rice	plasma membrane	63.76	64.91
CDY64184	Canola	mitochondrion	62.0	64.66
CDY13284	Canola	cytosol	34.82	64.49
KRG93706	Soybean	nucleus	22.0	64.26
Zm00001d027386_P002	Maize	cytosol	62.59	63.79
GSMUA_Achr4P24890_001	Banana	cytosol, plastid	66.35	63.73
HORVU4Hr1G085550.2	Barley	cytosol	62.12	63.54
TraesCS4D01G346700.1	Wheat	cytosol	62.0	63.42
CDX90808	Canola	cytosol	58.94	63.1
TraesCS5A01G520900.1	Wheat	cytosol	61.53	62.94
Bra000753.1-P	Field mustard	cytosol	58.71	62.85
TraesCS4B01G352300.1	Wheat	cytosol	61.88	61.38
KRH77470	Soybean	cytosol	9.76	60.58
Zm00001d050470_P001	Maize	mitochondrion	27.88	59.55
VIT_15s0048g01160.t01	Wine grape	cytosol	75.41	58.97
GSMUA_Achr5P20150_001	Banana	cytosol	69.06	58.88
VIT_12s0035g00200.t01	Wine grape	cytosol, nucleus, peroxisome	42.94	57.75
Zm00001d015818_P002	Maize	cytosol, nucleus, peroxisome	18.71	57.4
CDY46254	Canola	cytosol	6.47	56.7
EER92041	Sorghum	cytosol, nucleus, peroxisome	66.94	54.04
Zm00001d029684_P001	Maize	peroxisome	66.12	53.63
Os10t0524400-01	Rice	plasma membrane	65.65	53.35
Zm00001d015256_P001	Maize	cytosol	25.53	52.42
TraesCS1A01G187400.1	Wheat	peroxisome	67.88	52.12
VIT_00s0264g00100.t01	Wine grape	cytosol	53.29	51.89
HORVU1Hr1G048970.1	Barley	cytosol, nucleus, peroxisome	67.65	51.85
VIT_18s0001g00770.t01	Wine grape	nucleus	53.18	51.66
VIT_04s0008g05450.t01	Wine grape	cytosol	42.35	46.39
VIT_09s0002g06760.t01	Wine grape	cytosol	43.41	45.44
VIT_11s0016g05370.t01	Wine grape	cytosol	42.35	44.28
VIT_11s0016g05360.t01	Wine grape	cytosol	42.24	43.89
VIT_09s0002g02390.t01	Wine grape	cytosol	37.29	42.15
VIT_00s0264g00090.t01	Wine grape	cytosol	15.53	41.77
VIT_05s0077g01830.t01	Wine grape	cytosol	23.88	18.26

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	EntrezGene:100252995	wikigene:100252995	Gene3D:2.60.40.150	Gene3D:3.30.870.10
MapMan:5.7.2.4.2	InterPro:C2_dom	InterPro:C2_domain_sf	ProteinID:CCB58411	ProteinID:CCB58411.1	UniProt:F6HUI8
EMBL:FN596251	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0046470	GO:GO:0070290	InterPro:IPR000008
InterPro:IPR001736	InterPro:IPR035892	EntrezGene:LOC100252995	wikigene:LOC100252995	PFAM:PF00168	PFAM:PF00614
PFAM:PF12357	PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln
PFscan:PS50004	PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF84	SMART:SM00155	SMART:SM00239
SUPFAM:SSF49562	SUPFAM:SSF56024	UniParc:UPI0001982C13	ArrayExpress:VIT_02s0025g04620	EnsemblPlantsGene:VIT_02s0025g04620	EnsemblPlants:VIT_02s0025g04620.t01
unigene:Vvi.16010	RefSeq:XP_002275783	RefSeq:XP_002275783.1	RefSeq:XP_010661431.1	RefSeq:XP_010661435.1	SEG:seg

Description

Phospholipase D [Source:UniProtKB/TrEMBL;Acc:F6HUI8]

Coordinates

chr2:-:4153235..4161632

Molecular Weight (calculated)

95838.2 Da

IEP (calculated)

7.512

GRAVY (calculated)

-0.367

Length

850 amino acids

Sequence
(BLAST)

001: MAESAYVNSA PSDGYSQGQE IVPFPTAKGS LKFFLLHGNL DIWVKEAKTL PNMDMFHRSL SDMFGRFSVK SAPTIEGHKP HKITSDPYVT ISVSGAVIGR
101: TFVISNSENP VWMQHFYVPV AHHAAEVHFV VKDSDVVGSQ IIGAVGIPVE QIYSGSKVEG TFQILNGSGK PRKPGAVLTL SIQYTPIEKV TLYQFGVGSG
201: PEYTGVPGTY FPLRTGSKVT LYQDAHVHDG CLPNLKLDND VQFEHGKCWH DIFQAISQAR RLIYITGWSV YHSVRLIRDT DNSTEFMLGH LLKTKSQEGV
301: RVLLLVWDDP TSRSILGYKT DGIMQTYDEE TRRFFKHSSV QVLLCPRSAG KGHSWIKQQE VGTIYTHHQK TVIVDADAGH YKRKIIAFIG GLDLCAGRYD
401: TPQHHIFKTL QTVHQDDYHN PNFTGPTTGC PREPWHDMHC RIDGPAAYDI LTNFEERWLK ASKPRGLQKL KASSYDDALL KLERISDIIG MADASCPNEN
501: DPEAWHVQVF RSIDSTSVEG FPKEPKEATS KNLVCGKNIL IDMSIHTAYV KAIRAAQHFI YIENQYFLGS SYNWASYKDL GANNLIPMEI ALKIANKIRA
601: KERFSAYIVI PMWPEGVPTS TPTQRILFWQ HKTMQMMYEM VYKALQEVGL ENQYHPQDYL NFFCLGNREE GVDTSNAGNQ SAANTPQALA RKSRRFMIYV
701: HSKGMIVDDE YLIIGSANIN QRSMEGTRDT EIAMGAYQPH HTWARKQSSP HGQIYGYRMS LWAEHTGVLE ECFKQPESVE CVRRLRSLGE LNWRQFAADQ
801: ITEMKGHLLK YPVEVERTGK VRPLPGSETF PDVGGNIVGT FTAIQENLTI

Best Arabidopsis Sequence Match ( AT2G42010.1 )
(BLAST)

0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI

Arabidopsis Description

PLDBETA1phospholipase D beta 1 [Source:TAIR;Acc:AT2G42010]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.