Factsheet for Solyc08g080130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
vacuole 1
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g065490.2.1
Solyc10g006000.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	Solyc07g065490.2.1	AT4G26630.1	25387881
AT4G11850.1	Solyc10g006000.2.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058531	Potato	plastid	97.99	97.64
VIT_02s0025g04620.t01	Wine grape	cytosol	74.94	74.59
CDY13283	Canola	mitochondrion	30.02	71.95
CDY41006	Canola	mitochondrion	13.24	71.79
KRH77469	Soybean	nucleus	5.91	71.43
Bra022740.1-P	Field mustard	cytosol, extracellular	10.52	70.63
CDY28756	Canola	cytosol, extracellular	10.52	70.63
KRH77467	Soybean	nucleus	70.92	70.34
TraesCS1B01G195200.1	Wheat	cytosol	66.78	69.75
TraesCS1D01G189300.1	Wheat	cytosol	66.55	69.51
CDX86742	Canola	cytosol	68.68	68.59
Bra014871.1-P	Field mustard	cytosol	68.56	68.48
AT4G11850.1	Thale cress	cytosol	69.39	68.41
Bra000752.1-P	Field mustard	cytosol, nucleus, peroxisome	42.08	67.68
AT4G11840.1	Thale cress	cytosol	68.56	66.97
GSMUA_Achr8P12030_001	Banana	plastid	63.24	66.54
Solyc01g091910.2.1	Tomato	plastid	70.33	66.48
AT4G11830.2	Thale cress	cytosol	67.14	66.36
Os03t0119100-01	Rice	plasma membrane	65.25	66.11
TraesCS1A01G365100.2	Wheat	mitochondrion	64.54	65.94
TraesCS1B01G382600.1	Wheat	mitochondrion	64.3	65.7
CDX90807	Canola	cytosol	62.65	65.68
KRG93706	Soybean	nucleus	22.58	65.64
TraesCS1D01G370600.1	Wheat	cytosol	64.18	65.58
Zm00001d027386_P002	Maize	cytosol	64.3	65.23
KXG40331	Sorghum	cytosol	63.48	65.01
CDY64184	Canola	mitochondrion	62.53	64.91
Solyc01g103900.2.1	Tomato	cytosol	12.65	64.85
HORVU1Hr1G079150.1	Barley	cytosol	63.36	64.73
CDY13284	Canola	cytosol	34.75	64.05
HORVU4Hr1G085550.2	Barley	cytosol	62.06	63.18
CDY46254	Canola	cytosol	7.21	62.89
TraesCS4D01G346700.1	Wheat	cytosol	61.7	62.82
CDX90808	Canola	cytosol	58.75	62.59
TraesCS5A01G520900.1	Wheat	cytosol	61.47	62.58
Bra000753.1-P	Field mustard	cytosol	58.51	62.34
KRH77470	Soybean	cytosol	10.05	62.04
GSMUA_Achr4P24890_001	Banana	cytosol, plastid	64.42	61.58
TraesCS4B01G352300.1	Wheat	cytosol	61.35	60.56
Zm00001d050470_P001	Maize	mitochondrion	28.49	60.55
Zm00001d015818_P002	Maize	cytosol, nucleus, peroxisome	19.27	58.84
GSMUA_Achr5P20150_001	Banana	cytosol	67.14	56.97
EER92041	Sorghum	cytosol, nucleus, peroxisome	68.09	54.7
Zm00001d029684_P001	Maize	peroxisome	67.49	54.48
Solyc10g024370.1.1	Tomato	cytosol	53.66	54.11
Solyc01g103910.1.1	Tomato	cytosol	44.09	53.52
Os10t0524400-01	Rice	plasma membrane	66.08	53.44
Zm00001d015256_P001	Maize	cytosol	25.89	52.9
Solyc04g082000.2.1	Tomato	cytosol	52.36	52.8
Solyc10g017650.1.1	Tomato	cytosol	69.74	52.73
TraesCS1A01G187400.1	Wheat	peroxisome	67.73	51.76
HORVU1Hr1G048970.1	Barley	cytosol, nucleus, peroxisome	67.61	51.58
Solyc02g061850.2.1	Tomato	cytosol	50.0	49.76
Solyc02g083340.2.1	Tomato	nucleus	50.83	49.65
Solyc08g066800.2.1	Tomato	plastid	43.74	45.85
Solyc03g116620.2.1	Tomato	plastid	43.74	45.62
Solyc06g068090.2.1	Tomato	plastid	43.62	45.61
Solyc08g066790.2.1	Tomato	plastid	43.03	45.11
Solyc08g045740.1.1	Tomato	cytosol	14.07	43.59
Solyc12g011170.1.1	Tomato	cytosol	41.13	41.04
Solyc04g051140.1.1	Tomato	cytosol	9.22	38.81
Solyc01g100020.2.1	Tomato	cytosol, nucleus, peroxisome	22.7	18.25
Solyc01g065720.2.1	Tomato	cytosol	22.34	17.09

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.2	InterPro:C2_dom
InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0046470	GO:GO:0070290	InterPro:IPR000008
InterPro:IPR001736	InterPro:IPR035892	UniProt:K4CP13	PFAM:PF00168	PFAM:PF00614	PFAM:PF12357
PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50004
PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF84	SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562
SUPFAM:SSF56024	EnsemblPlantsGene:Solyc08g080130.2	EnsemblPlants:Solyc08g080130.2.1	UniParc:UPI000276B700	SEG:seg	:

Description

Phospholipase D [Source:UniProtKB/TrEMBL;Acc:K4CP13]

Coordinates

chr8:+:63469932..63475390

Molecular Weight (calculated)

95647.1 Da

IEP (calculated)

7.217

GRAVY (calculated)

-0.394

Length

846 amino acids

Sequence
(BLAST)

001: MAHFSYSESM SGSSQHGVQV VPFKTSAGSL RVLLLHGNLD IWVREAKNLP NMDLFHKKLD NLLGGLAKLG SKKEGSPKIT SDPYVTVSVS NAVVARTYVI
101: NNSENPIWMQ HFYVPVAHYA SEVHFVVKDN DVVGSQIIGA VGISVEQLCS GAMIEGTFPV LNSSGKPCKE GAVLTLSIQF TPMERVPLYH GGVGGDHEYQ
201: GVPGTYFPLR RGGKVTLYQD AHVPEGSLPN LWLENRVQYQ HGQCWQDIFD AITQARRLIY ITGWSVYHLV TLVRDNDNAE KSMLGEILKR KSQEGVRVLL
301: LIWDDPTSKS ILGYKTEGIM GTNDEETRRY FKHSSVQVLL CPRSAGKGHS WAKKQETETI YTHHQKTVIL DADAGNYQRK IMAFVGGLDL CKGRYDTPAH
401: PIFRTLQNVH KDDFHQPNYT GPTTGCPREP WHDLHSRIEG PAAYDVLTNF EERWLKASKR HGLQKMKASH DDALLKLDRI PDILGIADVP CLREDDADTW
501: HVQIFRSIDS NSVKGFPKDP KEATNMNLVC GKNVLIDMSI HTAYVKAIRA AQHFIYIENQ YFLGSSYNWS NYQNLGANNL IPMEIALKIA NKIRANERFA
601: AYIVLPMWPE GNPTSTPTQR ILFWQYNTMQ MMYETIYKAL QEVGLENTYE PQDYLMFFCL GNREVPENGI TTVVRSSKPN TPQELTQKSR RFMIYVHSKG
701: MIVDDEYVIM GSANINQRSL EGTRDTEIAM GAYQPHHTWA NKHSGPHAQV YGYRMSLWAE HTGTLEQCFE HPESLECVRR IRVFGEHNWL QYAADEVTEM
801: KGHLLKYPVE VDRTGKVRSL PGCETFPDIG GKIIGTFTGV QENLTI

Best Arabidopsis Sequence Match ( AT2G42010.1 )
(BLAST)

0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI

Arabidopsis Description

PLDBETA1phospholipase D beta 1 [Source:TAIR;Acc:AT2G42010]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.