CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91265
OQU91413

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	EER91265	AT4G26630.1	25387881
AT4G11850.1	OQU91413	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027386_P002	Maize	cytosol	95.28	94.36
Zm00001d050470_P001	Maize	mitochondrion	39.59	82.16
Os03t0119100-01	Rice	plasma membrane	82.32	81.44
HORVU4Hr1G085550.2	Barley	cytosol	79.3	78.82
TraesCS5A01G520900.1	Wheat	cytosol	78.93	78.46
TraesCS4D01G346700.1	Wheat	cytosol	78.81	78.34
TraesCS4B01G352300.1	Wheat	cytosol	78.93	76.08
CDY41006	Canola	mitochondrion	13.44	71.15
PGSC0003DMT400000378	Potato	cytosol	22.4	70.61
GSMUA_Achr8P12030_001	Banana	plastid	67.07	68.91
KRG89825	Soybean	cytoskeleton, cytosol, peroxisome	24.21	68.73
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	25.3	68.3
Bra022740.1-P	Field mustard	cytosol, extracellular	10.41	68.25
CDY28756	Canola	cytosol, extracellular	10.41	68.25
CDY13283	Canola	mitochondrion	28.81	67.42
Bra000752.1-P	Field mustard	cytosol, nucleus, peroxisome	41.53	65.21
VIT_02s0025g04620.t01	Wine grape	cytosol	65.5	63.65
Solyc08g080130.2.1	Tomato	nucleus	65.01	63.48
PGSC0003DMT400058531	Potato	plastid	65.01	63.25
CDX86742	Canola	cytosol	64.41	62.81
Bra014871.1-P	Field mustard	cytosol	64.29	62.69
KRH77467	Soybean	nucleus	63.68	61.66
AT4G11850.1	Thale cress	cytosol	63.92	61.54
CDX90807	Canola	cytosol	59.81	61.21
CDY64184	Canola	mitochondrion	60.17	60.98
Solyc01g091910.2.1	Tomato	plastid	65.62	60.56
AT4G11830.2	Thale cress	cytosol	62.71	60.51
AT4G11840.1	Thale cress	cytosol	63.08	60.16
KRG93706	Soybean	nucleus	21.07	59.79
EER92041	Sorghum	cytosol, nucleus, peroxisome	76.03	59.64
Bra000753.1-P	Field mustard	cytosol	56.17	58.44
CDX90808	Canola	cytosol	56.17	58.44
AT4G00240.1	Thale cress	cytosol	65.13	58.04
KRH77469	Soybean	nucleus	4.84	57.14
CDY13284	Canola	cytosol	31.6	56.86
CDX90066	Canola	cytosol	66.83	56.67
GSMUA_Achr5P20150_001	Banana	cytosol	68.16	56.47
KRH65182	Soybean	cytosol	50.61	55.07
KRH77470	Soybean	cytosol	9.08	54.74
CDY52961	Canola	cytosol, nucleus, peroxisome	65.38	54.44
CDY54926	Canola	cytosol, nucleus, peroxisome	65.38	53.84
CDY15144	Canola	peroxisome	66.95	51.97
KRH48290	Soybean	nucleus	65.74	51.86
Bra033225.1-P	Field mustard	cytosol	66.95	51.68
KXG36094	Sorghum	cytosol	52.3	50.29
VIT_15s0048g01160.t01	Wine grape	cytosol	65.98	50.14
AT2G42010.2	Thale cress	peroxisome	66.83	49.82
EER98315	Sorghum	cytosol	50.48	49.7
KRH01625	Soybean	cytosol	65.86	49.59
CDY46254	Canola	cytosol	5.81	49.48
KRH70487	Soybean	cytosol	65.62	49.01
Solyc10g017650.1.1	Tomato	cytosol	64.77	47.81
EER88618	Sorghum	cytosol	44.07	44.61
KXG31749	Sorghum	cytosol	43.46	44.21
EES17463	Sorghum	cytosol	43.22	43.91
OQU84227	Sorghum	cytosol	48.55	43.63
OQU77524	Sorghum	plastid	43.1	43.36
EES10287	Sorghum	cytosol	43.34	42.72
EER98913	Sorghum	cytosol	41.04	40.99
KXG39222	Sorghum	cytosol, peroxisome, vacuole	41.4	40.47
Bra008515.1-P	Field mustard	mitochondrion, plastid	65.5	37.31
OQU77834	Sorghum	endoplasmic reticulum, golgi	17.07	20.46
KXG32384	Sorghum	cytosol, nucleus, peroxisome	23.12	17.04
OQU77836	Sorghum	cytosol	6.54	11.27

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.2	UniProt:A0A1B6QQY3
InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0046470	GO:GO:0070290
InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	EnsemblPlants:KXG40331	ProteinID:KXG40331	ProteinID:KXG40331.1
PFAM:PF00168	PFAM:PF00614	PFAM:PF12357	PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C
InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50004	PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF61
MetaCyc:PWY-3561	MetaCyc:PWY-7039	SMART:SM00155	SMART:SM00239	EnsemblPlantsGene:SORBI_3001G529800	SUPFAM:SSF49562
SUPFAM:SSF56024	UniParc:UPI00081ADB27	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:79375598..79380051

Molecular Weight (calculated)

93036.5 Da

IEP (calculated)

6.994

GRAVY (calculated)

-0.400

Length

826 amino acids

Sequence
(BLAST)

001: MPQDDDESIA WVGTAGDDAP AVLLHGSLDI WIHEARNLPN KDILSKRMRD LLCKPSEGMT SDPYVTVQVA SAVVARTFVI PDDENPVWAQ QFMVPVAHET
101: AAVNFVVKDS DVVGAELIGV VAVRADRLQT GDRVEGAYPV LERNGKECAP GAVLRLSVQY VPVARLTMYH HGVTPGPDFA GVPRTYFPLR RGGKVTLYQD
201: AHVADGTLPE IRLGNGACRR HGQCWRDVYD AISQARRLIY ITGWSVFHTI HLVRDGHGDM ALGDLLRKKS QEGVRVLLLV WDDPTSRSLL GIKMEGYMGT
301: RDEETRRFFK HSSVQILLCP RSAGKRHSWV KQQETGTIFT HHQKTVILDA DAGNHKRKIV AFVGGLDLCG GRYDTPRHTL FRTLETFHKE DYYNPNFAVE
401: DAHGPREPWH DLHSKIDGPA AYDVLKNFEE RWLKASKRSG AKKLSKLSRS HNDSLLWIAK IPDIIAIDDE IYSNDNDPER WDVQIFRSID SNSVKGFPKD
501: PREATSKNLV CGKNVLIDMS VHTAYVNAIR GAQHFIYIEN QYFLGSSFNW DSHKDVGANN LIPIEIALKI ANKIYSNERF SAYIVVPMWP EGNPTGTPTQ
601: RILYWQKKTM QMMYEIIYKA LKEAGLDGTY EPQDYLNFFC LGNREAEDTT STSGGQFSAS NPQDQARKNR RFMVYVHSKG MIVDDEYVII GSANINQRSM
701: EGTRDTEIAM AAYQPQHTWA NTLSAPRGQI FGYRMSLWAE HIGYIEESFT MPESLECTRQ VRHIGQQNWE KFISSHVTEM KGHLLKYPVS IDSSGKVNPL
801: SGCATFPDLG GNICGSFLNI QENLTI

Best Arabidopsis Sequence Match ( AT2G42010.1 )
(BLAST)

0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI

Arabidopsis Description

PLDBETA1phospholipase D beta 1 [Source:TAIR;Acc:AT2G42010]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.