Factsheet for PGSC0003DMT400026602

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi

Predictor Summary:

plastid 2
vacuole 3
mitochondrion 3
peroxisome 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome, secretory
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	cytosol, plastid, vacuole
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000378	Potato	cytosol	71.57	83.59
KRG89825	Soybean	cytoskeleton, cytosol, peroxisome	58.17	61.17
PGSC0003DMT400009253	Potato	cytosol	48.04	56.32
Zm00001d015818_P002	Maize	cytosol, nucleus, peroxisome	44.77	49.46
PGSC0003DMT400024828	Potato	cytosol	17.32	41.73
GSMUA_Achr8P12030_001	Banana	plastid	75.16	28.61
PGSC0003DMT400058531	Potato	plastid	77.12	27.8
Zm00001d015256_P001	Maize	cytosol	37.58	27.78
TraesCS1D01G189300.1	Wheat	cytosol	73.2	27.65
TraesCS1B01G195200.1	Wheat	cytosol	72.88	27.53
Solyc10g017650.1.1	Tomato	cytosol	99.02	27.08
PGSC0003DMT400006661	Potato	cytosol	50.0	26.61
Os03t0119100-01	Rice	plasma membrane	71.57	26.23
HORVU4Hr1G085550.2	Barley	cytosol	70.59	25.99
TraesCS4D01G346700.1	Wheat	cytosol	70.26	25.87
TraesCS5A01G520900.1	Wheat	cytosol	70.26	25.87
TraesCS1D01G370600.1	Wheat	cytosol	69.93	25.85
TraesCS1A01G365100.2	Wheat	mitochondrion	69.61	25.72
HORVU1Hr1G079150.1	Barley	cytosol	69.61	25.72
AT4G00240.1	Thale cress	cytosol	77.78	25.67
TraesCS1B01G382600.1	Wheat	mitochondrion	68.63	25.36
KXG40331	Sorghum	cytosol	68.3	25.3
Zm00001d027386_P002	Maize	cytosol	68.95	25.3
CDX90066	Canola	cytosol	80.07	25.15
TraesCS4B01G352300.1	Wheat	cytosol	69.93	24.97
KRH65182	Soybean	cytosol	61.44	24.77
GSMUA_Achr4P24890_001	Banana	cytosol, plastid	71.57	24.75
CDY52961	Canola	cytosol, nucleus, peroxisome	78.76	24.29
CDY54926	Canola	cytosol, nucleus, peroxisome	78.76	24.03
KRH48290	Soybean	nucleus	80.39	23.5
CDY15144	Canola	peroxisome	80.07	23.03
PGSC0003DMT400025590	Potato	cytosol	60.78	22.93
Bra033225.1-P	Field mustard	cytosol	80.07	22.9
GSMUA_Achr5P20150_001	Banana	cytosol	73.53	22.57
VIT_15s0048g01160.t01	Wine grape	cytosol	80.07	22.54
PGSC0003DMT400011523	Potato	cytosol	62.09	22.2
AT2G42010.2	Thale cress	peroxisome	80.07	22.11
KRH01625	Soybean	cytosol	78.1	21.79
KRH70487	Soybean	cytosol	78.43	21.7
Zm00001d029684_P001	Maize	peroxisome	74.18	21.66
EER92041	Sorghum	cytosol, nucleus, peroxisome	74.51	21.65
Os10t0524400-01	Rice	plasma membrane	73.2	21.41
TraesCS1A01G187400.1	Wheat	peroxisome	73.53	20.33
HORVU1Hr1G048970.1	Barley	cytosol, nucleus, peroxisome	73.53	20.29
PGSC0003DMT400020297	Potato	cytosol	52.94	19.78
PGSC0003DMT400073469	Potato	cytosol	49.67	18.79
PGSC0003DMT400024831	Potato	extracellular	49.02	18.59
PGSC0003DMT400001650	Potato	cytosol, plastid	48.69	18.37
Bra008515.1-P	Field mustard	mitochondrion, plastid	79.41	16.76
Zm00001d050470_P001	Maize	mitochondrion	14.05	10.8
PGSC0003DMT400009250	Potato	cytosol	0.33	0.18

Protein Annotations

EnsemblPlants:PGSC0003DMT400026602	EnsemblPlantsGene:PGSC0003DMG400010276	Gene3D:3.30.870.10	GO:GO:0003674	GO:GO:0003824	InterPro:IPR001736
InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	PANTHER:PTHR18896
PANTHER:PTHR18896:SF65	PFAM:PF00614	PFAM:PF12357	PFscan:PS50035	PGSC:PGSC0003DMG400010276	SMART:SM00155
SUPFAM:SSF56024	UniParc:UPI000294B1DF	UniProt:M1ANF1	MapMan:50.3.1	:	:

Description

Phospholipase PLDb2 [Source:PGSC_GENE;Acc:PGSC0003DMG400010276]

Coordinates

chr10:-:38656786..38658887

Molecular Weight (calculated)

35290.0 Da

IEP (calculated)

6.242

GRAVY (calculated)

-0.355

Length

306 amino acids

Sequence
(BLAST)

001: MSIHTAYVKA IRAAQHFVYI ENQYFIGSSY NWSQYNDVGA NNLIPMEIAL KICEKIRAHQ RFAAYIVIPM WPEGNPTGAA TQRILFWQHK TIQMMYETIY
101: KTLVEVGLED AFSPQDYLNF FCLGNREVDV EETENSGAAN TPQALCRKYR RFMIYVHSKG MIVDDEYVIL GSANINQRSL EGTRDTEIAM GAYQPHHTWA
201: RNQSSPSGQI YRYRMSLWAE HLGVVDDYFI RPESLECVRR VRSMGEANWR QFSADEVTEM RGHLLKYPVE VDRRGKVKNL PGFEEFPDVG GDIIGSFLAI
301: QENLTI

Best Arabidopsis Sequence Match ( AT2G42010.1 )
(BLAST)

0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI

Arabidopsis Description

PLDBETA1phospholipase D beta 1 [Source:TAIR;Acc:AT2G42010]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.