Skip to main content
crop-pal logo
Rice
Search for another protein from :
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 1
  • golgi 1
  • plastid 1
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 plasma membrane: 27800704
plasma membrane: 28056797
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os03t0596900-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11850.1 Os03t0596900-01 AT4G26630.1 25387881
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G189300.1 Wheat cytosol 67.5 87.16
TraesCS1B01G195200.1 Wheat cytosol 67.5 87.16
Zm00001d029684_P001 Maize peroxisome 82.22 82.06
EER92041 Sorghum cytosol, nucleus, peroxisome 82.12 81.58
TraesCS1D01G370600.1 Wheat cytosol 63.0 79.59
HORVU1Hr1G079150.1 Barley cytosol 63.0 79.59
TraesCS1A01G365100.2 Wheat mitochondrion 63.0 79.59
TraesCS1B01G382600.1 Wheat mitochondrion 62.72 79.23
Os03t0119100-01 Rice plasma membrane 60.71 76.05
TraesCS1A01G187400.1 Wheat peroxisome 80.02 75.61
HORVU1Hr1G048970.1 Barley cytosol, nucleus, peroxisome 80.02 75.47
PGSC0003DMT400026602 Potato cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 21.41 73.2
CDY41006 Canola mitochondrion 10.9 73.08
PGSC0003DMT400000378 Potato cytosol 18.26 72.9
GSMUA_Achr8P12030_001 Banana plastid 55.54 72.26
CDY13283 Canola mitochondrion 23.61 69.97
Bra022740.1-P Field mustard cytosol, extracellular 8.41 69.84
CDY28756 Canola cytosol, extracellular 8.41 69.84
KRG89825 Soybean cytoskeleton, cytosol, peroxisome 18.74 67.35
Bra000752.1-P Field mustard cytosol, nucleus, peroxisome 33.84 67.3
GSMUA_Achr5P20150_001 Banana cytosol 63.29 66.4
PGSC0003DMT400058531 Potato plastid 53.63 66.08
Solyc08g080130.2.1 Tomato nucleus 53.44 66.08
VIT_02s0025g04620.t01 Wine grape cytosol 53.35 65.65
CDX86742 Canola cytosol 52.39 64.7
Solyc01g091910.2.1 Tomato plastid 55.26 64.58
Bra014871.1-P Field mustard cytosol 52.29 64.58
AT4G00240.1 Thale cress cytosol 57.17 64.51
AT4G11850.1 Thale cress cytosol 52.58 64.1
KRH77467 Soybean nucleus 51.82 63.54
CDX90066 Canola cytosol 58.8 63.14
CDX90807 Canola cytosol 48.66 63.07
AT4G11840.1 Thale cress cytosol 51.34 62.01
CDY64184 Canola mitochondrion 48.28 61.96
AT4G11830.2 Thale cress cytosol 50.57 61.8
CDY52961 Canola cytosol, nucleus, peroxisome 57.84 60.99
CDY54926 Canola cytosol, nucleus, peroxisome 58.22 60.72
KRH65182 Soybean cytosol 43.4 59.82
KRG93706 Soybean nucleus 16.63 59.79
CDX90808 Canola cytosol 45.22 59.57
CDY15144 Canola peroxisome 60.52 59.49
Bra033225.1-P Field mustard cytosol 60.71 59.35
Bra000753.1-P Field mustard cytosol 45.03 59.32
VIT_15s0048g01160.t01 Wine grape cytosol 60.13 57.87
CDY13284 Canola cytosol 25.33 57.73
AT2G42010.2 Thale cress peroxisome 60.61 57.22
KRH48290 Soybean nucleus 57.27 57.21
KRH01625 Soybean cytosol 59.85 57.06
KRH77470 Soybean cytosol 7.36 56.2
KRH70487 Soybean cytosol 59.18 55.97
KRH77469 Soybean nucleus 3.73 55.71
Solyc10g017650.1.1 Tomato cytosol 58.13 54.33
Os09t0543100-02 Rice plasma membrane 43.12 52.81
Os07t0260400-01 Rice cytosol, plasma membrane 42.26 52.74
CDY46254 Canola cytosol 4.78 51.55
Os06t0604400-01 Rice plasma membrane 35.85 45.9
Os01t0172400-03 Rice plastid 34.89 44.95
Os03t0391400-01 Rice plasma membrane 18.36 43.84
Os06t0604200-02 Rice cytosol, plasma membrane 34.61 43.51
Os05t0171000-01 Rice plasma membrane 34.03 43.2
Os06t0604300-01 Rice plasma membrane 34.42 42.76
Bra008515.1-P Field mustard mitochondrion, plastid 58.22 42.0
Os03t0840800-01 Rice cytosol 13.67 40.28
Os09t0421300-01 Rice cytosol 31.45 40.27
Os08t0401800-00 Rice plasma membrane 28.49 37.02
Os02t0120200-01 Rice extracellular 17.21 19.78
Os05t0358700-01 Rice cytosol, plasma membrane 1.53 9.2
Protein Annotations
KEGG:00564+3.1.4.4KEGG:00565+3.1.4.4Gene3D:2.60.40.150Gene3D:3.30.870.10EntrezGene:4349161MapMan:5.7.2.4.2
ProteinID:AAO00720.1ProteinID:AAP54704.1ProteinID:ABB47913.1EMBL:AK121075ProteinID:BAF27022.1ProteinID:BAT11735.1
InterPro:C2_domInterPro:C2_domain_sfGO:GO:0003674GO:GO:0003824InterPro:IPR000008InterPro:IPR001736
InterPro:IPR035892EnsemblPlantsGene:Os10g0524400EnsemblPlants:Os10t0524400-01PFAM:PF00168PFAM:PF00614PFAM:PF12357
InterPro:PLipase_D/transphosphatidylaseInterPro:PLipase_D_CInterPro:PLipase_D_famPFscan:PS50004PFscan:PS50035PANTHER:PTHR18896
PANTHER:PTHR18896:SF61UniProt:Q8H093SMART:SM00155SMART:SM00239SUPFAM:SSF49562SUPFAM:SSF56024
UniParc:UPI00000ADC14RefSeq:XP_015614421.1SEG:seg:::
Description
PHOSPHOLIPASE D beta 1Similar to Phospholipase D beta 2. (Os10t0524400-01);Similar to Phospholipase D. (Os10t0524400-02);Similar to Phospholipase D beta 2. (Os10t0524400-03);Phospholipase D domain containing protein. (Os10t0524400-04)
Coordinates
chr10:-:20379579..20386096
Molecular Weight (calculated)
116551.0 Da
IEP (calculated)
7.655
GRAVY (calculated)
-0.498
Length
1046 amino acids
Sequence
(BLAST)
0001: MEGGNHGGGG YPYPPPQQYP YPYGQYPYQY PPPQQQPPPP SAYLSPSRSF HGYPSAPPPQ PQPQPYAHHS APLQPYPPPP QHHAYPPPQP HPPSPYVYDP
0101: YHAPAAAYPS YPSPNPSPSI SPSSSFHHHP EPPSPSPSAP SYPSIADGLA NMHVSDRHDY PPPPSPAAVP AASSPSVLPP SASFPGGGSS HGGGGMQMVP
0201: YGPPAGGSQH GGMQMVAYGS PAGGSQHGSV RPSLKVVLLH GTLDVWVYDA RNLPNKDLFS KRVGDLLGPR LIGAVGSKMS SANMTSDPYV TIQVSYATVA
0301: RTYVVPNNEN PVWTQNFLVP VGHDAAEVEF VVKDNDVFGA QLIGTVSIPA EKLLFGERIN GIYDVLESNG KPCAQGAVLR LSIQYIPVAQ LKMYHHGVIA
0401: GPDSLGVPNT YFPMRRGNRV TLYQDAHVPD GCLPDFCLDH GMRYQHGQCW RDIYDAICQA RRLIYIVGWS VFHTIHLIRE GVEKMPSLGE LLKMKSQEGV
0501: RVLLLVWDDP TSRSILGIKT DGFMGTRDEE TRRFFKHSSV QVLLCPRSAG KRHSWVKQQE TGTIFTHHQK TVILDADAGN HKRKIIAFVG GLDLCGGRYD
0601: TPSHPLFRSL QTVHKEDYYN PNFATVDARG PREPWHDLHS KIDGPAAYDV LQNFQERWLK ASKRHGIKKL GKSYDDALLS IERIPDFISI NDAIYFSDND
0701: PETWHVQVFR SIDSNSAKGF PKDPREATRK NLVCGKNVLI DMSIHTAYVN AIRGAQHFIY IENQYFIGSS FNWDSNKDIG ANNLIPIEIA LKIANKIKAK
0801: ERFSAYIVIP MWPEGNPTGA PTQRILYWQH KTMQMMYETI YRALKEEGLD DLYEPQDYLN FFCLGNREVA DSPSTSNSTS TPQEQARKHR RFMVYVHSKG
0901: MIVDDEYVII GSANINQRSM EGIRDTEIAM GAYQPQYTWA SKVSAPRGQI YGYRMSLWAE HIGVVEEGFN YPETMECMRR VRQIGEQNWE RFVDNEVTEM
1001: RGHLMKYPVS VDRKGKVKPL PGCTSFPDMG GNICGSFRAI QENLTI
Best Arabidopsis Sequence Match ( AT2G42010.1 )
(BLAST)
0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI
Arabidopsis Description
PLDBETA1phospholipase D beta 1 [Source:TAIR;Acc:AT2G42010]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.