Factsheet for AT4G00240.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52961	Canola	cytosol, nucleus, peroxisome	85.76	80.14
CDY54926	Canola	cytosol, nucleus, peroxisome	86.3	79.76
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	25.67	77.78
PGSC0003DMT400000378	Potato	cytosol	21.9	77.48
TraesCS1B01G195200.1	Wheat	cytosol	61.49	70.37
TraesCS1D01G189300.1	Wheat	cytosol	61.49	70.37
Solyc01g091910.2.1	Tomato	plastid	67.75	70.17
GSMUA_Achr8P12030_001	Banana	plastid	60.63	69.9
KRG89825	Soybean	cytoskeleton, cytosol, peroxisome	21.9	69.76
AT2G42010.2	Thale cress	peroxisome	83.06	69.49
TraesCS1A01G365100.2	Wheat	mitochondrion	60.3	67.51
TraesCS1B01G382600.1	Wheat	mitochondrion	60.19	67.39
TraesCS1D01G370600.1	Wheat	cytosol	59.76	66.91
AT4G11850.1	Thale cress	cytosol	61.49	66.43
Os03t0119100-01	Rice	plasma membrane	59.65	66.23
HORVU1Hr1G079150.1	Barley	cytosol	59.01	66.06
KRH65182	Soybean	cytosol	53.72	65.61
KXG40331	Sorghum	cytosol	58.04	65.13
AT4G11840.1	Thale cress	cytosol	60.84	65.13
AT4G11830.2	Thale cress	cytosol	59.44	64.37
Zm00001d027386_P002	Maize	cytosol	57.61	64.03
HORVU4Hr1G085550.2	Barley	cytosol	56.96	63.54
TraesCS4D01G346700.1	Wheat	cytosol	56.96	63.54
GSMUA_Achr4P24890_001	Banana	cytosol, plastid	60.09	62.94
TraesCS5A01G520900.1	Wheat	cytosol	56.31	62.82
KRH48290	Soybean	nucleus	70.66	62.56
VIT_15s0048g01160.t01	Wine grape	cytosol	73.25	62.47
KRH01625	Soybean	cytosol	72.92	61.62
Zm00001d050470_P001	Maize	mitochondrion	26.32	61.31
TraesCS4B01G352300.1	Wheat	cytosol	56.31	60.91
KRH70487	Soybean	cytosol	72.38	60.67
GSMUA_Achr5P20150_001	Banana	cytosol	64.83	60.28
Os10t0524400-01	Rice	plasma membrane	64.51	57.17
Solyc10g017650.1.1	Tomato	cytosol	68.82	57.02
EER92041	Sorghum	cytosol, nucleus, peroxisome	64.51	56.79
Zm00001d029684_P001	Maize	peroxisome	64.08	56.68
Zm00001d015818_P002	Maize	cytosol, nucleus, peroxisome	16.72	55.96
Bra008515.1-P	Field mustard	mitochondrion, plastid	85.76	54.83
TraesCS1A01G187400.1	Wheat	peroxisome	64.83	54.29
HORVU1Hr1G048970.1	Barley	cytosol, nucleus, peroxisome	64.62	54.01
Zm00001d015256_P001	Maize	cytosol	23.52	52.66
AT4G35790.1	Thale cress	cytosol	47.36	50.58
AT1G52570.1	Thale cress	cytosol	39.7	45.43
AT3G15730.1	Thale cress	cytosol	39.27	44.94
AT5G25370.2	Thale cress	cytosol	39.27	44.39
AT1G55180.1	Thale cress	cytosol	31.93	38.85
AT3G05630.1	Thale cress	cytosol	20.71	18.36
AT3G16785.4	Thale cress	plastid	20.39	16.59

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.2	EntrezGene:826673
ProteinID:AAB62845.1	ProteinID:AAF02803.1	ProteinID:AEE81845.1	ArrayExpress:AT4G00240	EnsemblPlantsGene:AT4G00240	RefSeq:AT4G00240
TAIR:AT4G00240	RefSeq:AT4G00240-TAIR-G	EnsemblPlants:AT4G00240.1	TAIR:AT4G00240.1	InterPro:C2_dom	InterPro:C2_domain_sf
ProteinID:CAB80782.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787
GO:GO:0046470	GO:GO:0070290	InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	RefSeq:NP_567160.1
UniProt:O23078	PFAM:PF00168	PFAM:PF00614	PFAM:PF12357	PIRSF:PIRSF036470	Symbol:PLDBETA2
InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PO:PO:0000005	PO:PO:0000084
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0007095	PO:PO:0007611	PO:PO:0007616
PO:PO:0009005	PO:PO:0009025	PO:PO:0009046	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281
PFscan:PS50004	PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF65	SMART:SM00155	SMART:SM00239
SUPFAM:SSF49562	SUPFAM:SSF56024	UniParc:UPI0000162956	SEG:seg	:	:

Description

PLDBETA2Phospholipase D beta 2 [Source:UniProtKB/Swiss-Prot;Acc:O23078]

Coordinates

chr4:-:106250..111005

Molecular Weight (calculated)

104161.0 Da

IEP (calculated)

7.228

GRAVY (calculated)

-0.436

Length

927 amino acids

Sequence
(BLAST)

001: MENYGWNYPY YPYRPPRPNP PYPAPPHHHG SMSHSGPLDH HHPPMSYYAS FDYQHQPPPP YPPVSYYASF SSHSDLSYSG RLDSSGHGFT STASPHSPGM
101: HIVPFGKASL KVLLLHGNLD IWVSCANNLP NLDLFHKTLG VVFGGMTNMI EGQLSKKITS DPYVSISVAG AVIGRTYVIS NSENPVWQQH FYVPVAHHAA
201: EVHFVVKDSD AVGSQLIGIV TIPVEQIYSG ARIEGTYSIR DSNGKPCKPG ATLSLSIQYT SMNKLSVYHS GVGAGPYYQG VPGTYFPLRE GGSVTLYQDA
301: HVPEGMLPGI KLGNGMCYEH GKCWHDMFHA ICQARRLIYI TGWSVWHNVR LVRDKEDPSS ECRLGELLRS KSQEGVRVLL LVWDDPTSQN ILGYMTDGVM
401: GTHDEETRRF FKDSSVQVLL CPRNAGKRHS WVKQREVGTI YTHHQKNLIV DADAGGNRRK IVAFVGGLDL CDGRYDTPQH PLFRTLQTDH NGDYHNPTFT
501: GNVSGCPREP WHDLHSKIDG PAAYDVLTNF EERWLKAAKP HRINKLKTSY DDALLRIDRI PDILRVLDAP TVSANDPEAW HVQIFRSIDS NSVKGFPKDP
601: KYATSKNLVC GKNVLIDMSI HTAYVKAIRA AQHFIYIENQ YFIGSSYDWN AHKDIGANNL IPMEIALKIA DKIRAKERFA AYIVIPMWPE GVPTGAATQR
701: ILYWQHKTMQ MMYGTIYNAL VEAGLEDEYS PQDYLNFFCL GNREMVNGNN ESGTGSASNE NTPQGLCRKS RRFMIYVHSK GMVVDDEYVV IGSANINQRS
801: MEGTRDTEIA MGAYQPQHTW ARRQSGPRGQ IYGYRMSLWA EHMALLDDCF VEPESLGCVR KVRTVAEENW EQFRSEEVSE MRGHLMKYPV EVDRKGKVRP
901: LPGSEEFPDV GGNVVGSFLA IQENLTI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.