Factsheet for GSMUA_Achr4P24890_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
vacuole 1
cytosol 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P09250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	GSMUA_Achr9P09250_001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41006	Canola	mitochondrion	12.99	73.72
GSMUA_Achr8P12030_001	Banana	plastid	66.67	73.38
PGSC0003DMT400000378	Potato	cytosol	21.69	73.28
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	24.75	71.57
CDY28756	Canola	cytosol, extracellular	10.06	70.63
Bra022740.1-P	Field mustard	cytosol, extracellular	10.06	70.63
CDY13283	Canola	mitochondrion	28.14	70.54
Bra000752.1-P	Field mustard	cytosol, nucleus, peroxisome	40.11	67.49
VIT_02s0025g04620.t01	Wine grape	cytosol	63.73	66.35
KRG89825	Soybean	cytoskeleton, cytosol, peroxisome	21.81	66.32
PGSC0003DMT400058531	Potato	plastid	61.92	64.55
Solyc08g080130.2.1	Tomato	nucleus	61.58	64.42
GSMUA_Achr5P20150_001	Banana	cytosol	72.54	64.39
KRH77467	Soybean	nucleus	61.92	64.24
CDX86742	Canola	cytosol	60.68	63.4
Bra014871.1-P	Field mustard	cytosol	60.56	63.28
Solyc01g091910.2.1	Tomato	plastid	63.73	63.02
AT4G11850.1	Thale cress	cytosol	60.56	62.47
CDX90807	Canola	cytosol	56.61	62.08
CDY64184	Canola	mitochondrion	56.38	61.23
AT4G11840.1	Thale cress	cytosol	59.32	60.62
AT4G11830.2	Thale cress	cytosol	58.42	60.4
AT4G00240.1	Thale cress	cytosol	62.94	60.09
KRH77470	Soybean	cytosol	9.15	59.12
CDX90808	Canola	cytosol	52.88	58.94
Bra000753.1-P	Field mustard	cytosol	52.88	58.94
KRH77469	Soybean	nucleus	4.63	58.57
KRG93706	Soybean	nucleus	18.98	57.73
CDX90066	Canola	cytosol	63.05	57.29
CDY52961	Canola	cytosol, nucleus, peroxisome	62.49	55.75
CDY46254	Canola	cytosol	6.1	55.67
CDY13284	Canola	cytosol	28.59	55.12
CDY54926	Canola	cytosol, nucleus, peroxisome	62.26	54.94
KRH65182	Soybean	cytosol	47.01	54.81
GSMUA_Achr7P23470_001	Banana	cytosol	48.47	54.51
CDY15144	Canola	peroxisome	64.29	53.48
KRH48290	Soybean	nucleus	62.94	53.2
Bra033225.1-P	Field mustard	cytosol	64.29	53.18
VIT_15s0048g01160.t01	Wine grape	cytosol	64.97	52.9
GSMUA_Achr9P21120_001	Banana	nucleus	15.03	52.78
GSMUA_Achr1P14920_001	Banana	plastid	47.23	52.64
AT2G42010.2	Thale cress	peroxisome	65.31	52.17
KRH01625	Soybean	cytosol	64.52	52.05
GSMUA_Achr1P07360_001	Banana	cytosol	43.05	52.05
KRH70487	Soybean	cytosol	64.29	51.45
GSMUA_Achr11P...	Banana	cytosol	47.46	50.48
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	9.83	50.29
GSMUA_AchrUn_...	Banana	cytosol	48.7	50.23
Solyc10g017650.1.1	Tomato	cytosol	62.6	49.51
GSMUA_Achr9P21110_001	Banana	mitochondrion	33.56	47.14
GSMUA_Achr7P10170_001	Banana	cytosol	26.78	43.89
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	19.66	43.61
GSMUA_Achr1P14590_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	25.65	40.68
GSMUA_Achr10P...	Banana	cytosol	14.01	40.66
Bra008515.1-P	Field mustard	mitochondrion, plastid	62.49	38.14
GSMUA_Achr10P...	Banana	cytosol, plastid	19.21	37.2
GSMUA_Achr6P35870_001	Banana	plasma membrane	27.8	25.87
GSMUA_Achr2P00290_001	Banana	endoplasmic reticulum	9.83	23.26
GSMUA_Achr9P16530_001	Banana	cytosol, nucleus, peroxisome	18.64	15.61
GSMUA_Achr2P00270_001	Banana	cytosol, nucleus, peroxisome	11.19	12.19
GSMUA_Achr11P...	Banana	mitochondrion	2.03	10.23
GSMUA_Achr11P...	Banana	cytosol	1.92	7.14

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:50.3.1	InterPro:C2_dom
InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0046470	GO:GO:0070290	EnsemblPlantsGene:GSMUA_Achr4G24890_001
EnsemblPlants:GSMUA_Achr4P24890_001	EnsemblPlants:GSMUA_Achr4T24890_001	InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	UniProt:M0SRV0
PFAM:PF00168	PFAM:PF00614	PFAM:PF12357	PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C
InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50004	PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF65
SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF56024	UniParc:UPI0002949B04	:

Description

Phospholipase D beta 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G24890_001]

Coordinates

chr4:-:24559742..24571840

Molecular Weight (calculated)

100466.0 Da

IEP (calculated)

8.055

GRAVY (calculated)

-0.413

Length

885 amino acids

Sequence
(BLAST)

001: MVHGHLTNTF HGSFSSPHST PPGSPFGSSY HGASFGRGVS LIVPYARSQK GQASLKVLLL HGSLDVWVCE ARYLPNKDQF SKTLGDMIGP RLSKTLSGKM
101: RNLSSMTSDP YVNIMVCGAT IGRTYVLNNT ENPVWMQHFN LAVAHHTAEI RFLVKDNDIV GAQLIGTVSI PAEWIYSGER VEGVYPILDS NGKQCKPGAY
201: CGVPGTYFPL RKAGKVTLYQ DAHVPDGCLP ELKLENGQNY VHGKCWHDIF DAISQAHRLI YIIGWSVFHM VRLVRDTGYG SSPNIGDLLK SKSQEGVRVL
301: LLLWDDPTSR SILGIRTNGV MGTHDEETRH FFKHSSVQVL LCPRSAGKRH SFVKQQETGT IYTHHQKQVI VDTDAGNNKR KITAFLGGID LCGGRYDNPE
401: HPLFKTLQSL HKDDYYNPTF LDSDNSGPRQ PWHDLHARID GPAAYDVLIN FEERWLKASK RYRIKNLKKL SEDALLKIER IPHIIGVNDS MYLNDNDPET
501: WHAQVFRSID SNSAKGFPKD PREATRKNLV CGKNILIDMS IHTAYVNAIR AAQHFIYIEN QYFLGSSFNW DSHEDLGANN LIPIEIALKI ANKIKANERF
601: SAYIVVPMWP EGGPTSAPIQ RILYWQKKTM QMMYETVYTA LKEVGLDDTY EPQDYLNFFC LGNREAPDLA ITSQNATANT PHDYNTVSYR SIRTGQIEDW
701: YEQYIEYVPT NYYSITCCWF HQARAKKNRR FMIYVHSKGM IVDDEYVILG SANINQRSLE GTRDTEIAIG AYQPQYTWAR KLSGPRGEIY GYRMSLWAEH
801: IGFLEECFTQ PESLECMRRV RDLGKQNWKQ YVADEITEMK SHLLKYPVFV DRKGRVKPLP GCETFPDIGG NICGSFLGFQ ENITI

Best Arabidopsis Sequence Match ( AT2G42010.2 )
(BLAST)

0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ VTKRRECLLL KFLMFLKRGV PVVLQALSRK SRRFMVYVHS KGMVVDDEYV VIGSANINQR SMEGTRDTEI AMGAYQPQHT
1001: WARKHSGPRG QIYGYRMSLW AEHMATLDDC FTQPESIECV RKVRTMGERN WKQFAAEEVS DMRGHLLKYP VEVDRKGKVR PLPGSETFPD VGGNIVGSFI
1101: AIQENLTI

Arabidopsis Description

PLDBETA1phospholipase D beta 1 [Source:TAIR;Acc:AT2G42010]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.