Factsheet for PGSC0003DMT400058531

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
vacuole 1
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, vacuole
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037344
PGSC0003DMT400057390

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	PGSC0003DMT400037344	AT4G26630.1	25387881
AT4G11850.1	PGSC0003DMT400057390	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080130.2.1	Tomato	nucleus	97.64	97.99
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	27.8	77.12
PGSC0003DMT400000378	Potato	cytosol	23.67	76.72
VIT_02s0025g04620.t01	Wine grape	cytosol	74.68	74.59
CDY13283	Canola	mitochondrion	29.92	71.95
CDY41006	Canola	mitochondrion	13.19	71.79
Bra022740.1-P	Field mustard	cytosol, extracellular	10.48	70.63
CDY28756	Canola	cytosol, extracellular	10.48	70.63
KRH77467	Soybean	nucleus	70.67	70.34
KRH77469	Soybean	nucleus	5.77	70.0
TraesCS1B01G195200.1	Wheat	cytosol	66.67	69.88
TraesCS1D01G189300.1	Wheat	cytosol	66.43	69.63
CDX86742	Canola	cytosol	68.43	68.59
AT4G11850.1	Thale cress	cytosol	69.26	68.53
Bra014871.1-P	Field mustard	cytosol	68.32	68.48
Bra000752.1-P	Field mustard	cytosol, nucleus, peroxisome	41.93	67.68
AT4G11840.1	Thale cress	cytosol	68.43	67.09
GSMUA_Achr8P12030_001	Banana	plastid	63.37	66.92
AT4G11830.2	Thale cress	cytosol	67.14	66.59
TraesCS1A01G365100.2	Wheat	mitochondrion	64.43	66.06
Os03t0119100-01	Rice	plasma membrane	64.9	65.99
TraesCS1B01G382600.1	Wheat	mitochondrion	64.08	65.7
KRG93706	Soybean	nucleus	22.5	65.64
TraesCS1D01G370600.1	Wheat	cytosol	63.96	65.58
CDX90807	Canola	cytosol	62.31	65.55
Zm00001d027386_P002	Maize	cytosol	64.08	65.23
KXG40331	Sorghum	cytosol	63.25	65.01
HORVU1Hr1G079150.1	Barley	cytosol	63.25	64.86
CDY64184	Canola	mitochondrion	62.19	64.79
CDY13284	Canola	cytosol	34.51	63.83
HORVU4Hr1G085550.2	Barley	cytosol	61.96	63.3
CDY46254	Canola	cytosol	7.18	62.89
TraesCS4D01G346700.1	Wheat	cytosol	61.37	62.7
TraesCS5A01G520900.1	Wheat	cytosol	61.13	62.45
CDX90808	Canola	cytosol	58.3	62.34
Bra000753.1-P	Field mustard	cytosol	58.07	62.09
KRH77470	Soybean	cytosol	10.01	62.04
GSMUA_Achr4P24890_001	Banana	cytosol, plastid	64.55	61.92
Zm00001d050470_P001	Maize	mitochondrion	28.39	60.55
TraesCS4B01G352300.1	Wheat	cytosol	61.01	60.44
Zm00001d015818_P002	Maize	cytosol, nucleus, peroxisome	18.85	57.76
GSMUA_Achr5P20150_001	Banana	cytosol	66.78	56.87
PGSC0003DMT400009253	Potato	cytosol	17.31	56.32
EER92041	Sorghum	cytosol, nucleus, peroxisome	68.43	55.18
Zm00001d029684_P001	Maize	peroxisome	67.84	54.96
PGSC0003DMT400011523	Potato	cytosol	54.53	54.09
Os10t0524400-01	Rice	plasma membrane	66.08	53.63
PGSC0003DMT400025590	Potato	cytosol	51.0	53.39
Zm00001d015256_P001	Maize	cytosol	25.56	52.42
TraesCS1A01G187400.1	Wheat	peroxisome	67.61	51.85
HORVU1Hr1G048970.1	Barley	cytosol, nucleus, peroxisome	67.49	51.67
PGSC0003DMT400006661	Potato	cytosol	32.39	47.83
PGSC0003DMT400001650	Potato	cytosol, plastid	43.58	45.62
PGSC0003DMT400073469	Potato	cytosol	43.46	45.61
PGSC0003DMT400024831	Potato	extracellular	43.35	45.6
PGSC0003DMT400009250	Potato	cytosol	29.33	45.03
PGSC0003DMT400020297	Potato	cytosol	41.34	42.86
PGSC0003DMT400024828	Potato	cytosol	6.01	40.16

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	EntrezGene:102600860	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.2
InterPro:C2_dom	InterPro:C2_domain_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0046470
GO:GO:0070290	InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	UniProt:M1C2T7	PFAM:PF00168
PFAM:PF00614	PFAM:PF12357	EnsemblPlantsGene:PGSC0003DMG401022737	PGSC:PGSC0003DMG401022737	EnsemblPlants:PGSC0003DMT400058531	PIRSF:PIRSF036470
InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50004	PFscan:PS50035
PANTHER:PTHR18896	PANTHER:PTHR18896:SF84	SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF56024
UniParc:UPI000295D099	RefSeq:XP_015169638.1	SEG:seg	:	:	:

Description

Phospholipase PLDb1 [Source:PGSC_GENE;Acc:PGSC0003DMG401022737]

Coordinates

chr8:+:53825898..53831833

Molecular Weight (calculated)

95668.1 Da

IEP (calculated)

7.403

GRAVY (calculated)

-0.386

Length

849 amino acids

Sequence
(BLAST)

001: MAQFSYSESM SGSSQHGVQV VPFKTSAGSL RVLLLHGNLD IWVREARNLP NMDLFHKKLD NLLGGLAKLG SKKEGSPKIT SDPYVTVSVS NAVVARTYVI
101: NNSENPVWMQ HFYVPVAHYA SEVHFVVKDN DVVGSQIIGA VGISVEQLCS GAMIEGTFPV LNSSGKPCKE GAVLTLSIQF TPMERVPLYH GGVGGDHEYQ
201: GVPGTYFPLR RGGKVTLYQD AHVPEGSLPN LWLENRVQYQ HGQCWQDIFD AITQARRLIY ITGWSVTHLV TLVRDNDNAE KSMLGEILKR KSQEGVRVLL
301: LIWDDPTSKS ILGYKTVSTE GIMGTNDEET RRYFKHSSVQ VLLCPRSAGK GHSWAKKQET ETIYTHHQKT VIVDADAGNY QRKIMAFVGG LDLCKGRYDT
401: PAHHIFRTLQ NVHKDDFHQP NYTGPTTGCP REPWHDLHSR IEGPAAYDVL SNFEERWLKA SKRHGLQKMK ASHDDALLKL DRIPDILGIA DAPCLREDDA
501: DTWHVQIFRS IDSNSVKGFP KDPKEATNKN LVCGKNVLID MSIHTAYVKA IRAAQHFIYI ENQYFLGSSY NWSNYQNLGA NNLIPMEIAL KIANKIRANE
601: RFAAYIVLPM WPEGNPTSTA TQRILFWQHN TMQMMYGTIY KALQEVGLEN TYEPQDYLIF FCLGNREVPE NGITTVVRSS KPNTPQELTQ KSRRFMIYVH
701: SKGMIVDDEY VILGSANINQ RSLEGTRDTE IAMGAYQPHH TWANKHAGPH AQIYGYRMSL WAEHTGTLEQ CFEHPESLEC VRRIRVFGEH NWLQYAADEV
801: TEMKGHLLKY PVEVDRTGKV KSLPGCETFP DIGGKIIGTF TGVQENLTI

Best Arabidopsis Sequence Match ( AT2G42010.1 )
(BLAST)

0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI

Arabidopsis Description

PLDBETA1phospholipase D beta 1 [Source:TAIR;Acc:AT2G42010]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.