Factsheet for PGSC0003DMT400024831

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
vacuole 2
cytosol 2
endoplasmic reticulum 1
mitochondrion 1
plastid 1
extracellular 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g066800.2.1	Tomato	plastid	96.9	96.9
PGSC0003DMT400024828	Potato	cytosol	14.87	94.49
GSMUA_Achr7P10170_001	Banana	cytosol	51.67	77.22
PGSC0003DMT400073469	Potato	cytosol	76.95	76.76
KXG31749	Sorghum	cytosol	77.08	76.6
TraesCS3D01G130900.1	Wheat	golgi	76.95	76.48
TraesCS3B01G149100.1	Wheat	unclear	76.83	76.35
TraesCS3A01G130000.1	Wheat	plastid	76.7	76.23
HORVU3Hr1G024530.2	Barley	plastid	76.58	76.11
Zm00001d008727_P002	Maize	cytosol	76.33	75.86
Zm00001d039670_P004	Maize	cytosol	76.21	75.74
Os01t0172400-03	Rice	plastid	75.34	74.88
EES17463	Sorghum	cytosol	74.47	73.92
PGSC0003DMT400001650	Potato	cytosol, plastid	72.74	72.38
TraesCS1D01G116700.1	Wheat	cytosol	70.88	70.18
OQU77524	Sorghum	plastid	71.38	70.16
TraesCS1A01G115300.1	Wheat	cytosol	70.51	69.82
Os05t0171000-01	Rice	plasma membrane	71.13	69.66
TraesCS1B01G135200.1	Wheat	cytosol	69.39	68.46
HORVU1Hr1G025370.1	Barley	cytosol	71.25	67.25
Zm00001d037643_P001	Maize	cytosol	70.38	62.69
GSMUA_Achr10P...	Banana	cytosol, plastid	35.19	62.14
PGSC0003DMT400020297	Potato	cytosol	62.58	61.66
PGSC0003DMT400006661	Potato	cytosol	36.18	50.78
PGSC0003DMT400009253	Potato	cytosol	16.11	49.81
PGSC0003DMT400000378	Potato	cytosol	15.99	49.24
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	18.59	49.02
PGSC0003DMT400025590	Potato	cytosol	46.34	46.12
PGSC0003DMT400058531	Potato	plastid	45.6	43.35
PGSC0003DMT400011523	Potato	cytosol	45.72	43.11
PGSC0003DMT400009250	Potato	cytosol	25.15	36.71

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	EntrezGene:102588687	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.1
ProteinID:AFX67027	ProteinID:AFX67027.1	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0004630	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787
GO:GO:0046470	GO:GO:0070290	InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	EMBL:JX839744
UniProt:M1AKN6	PFAM:PF00168	PFAM:PF00614	PFAM:PF12357	EnsemblPlantsGene:PGSC0003DMG400009599	PGSC:PGSC0003DMG400009599
EnsemblPlants:PGSC0003DMT400024831	PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln
PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF109	SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562
SUPFAM:SSF56024	UniParc:UPI0002953B60	RefSeq:XP_006367508.1	RefSeq:XP_006367509.1	RefSeq:XP_015160958.1	SEG:seg

Description

Phospholipase D [Source:PGSC_GENE;Acc:PGSC0003DMG400009599]

Coordinates

chr8:+:39574061..39580680

Molecular Weight (calculated)

91968.7 Da

IEP (calculated)

6.023

GRAVY (calculated)

-0.375

Length

807 amino acids

Sequence
(BLAST)

001: MAQILLHGTL HVTIFEVDKL RTNFGRDIFN KVVQGIEGAI GFNKTASTLY ATIDLGKARV GRTRLLDEHK NPRWYESFHI YCAHMASDVI FTVKADNPIG
101: AELIGRAYLP VERLIDGEVV DEWLEILDTE RKPVQGHSKI HVKLQYFDVT REYNWNRGIR VTRFPGVPYT FFSQRQGCKV TLYQDSHVPD NFVPKIPLAG
201: GKFYEPQRCW EDIFDAITNA KHMIYITGWS VYTEITLIRD TRRPKPGGDI TLGELLKKKA NEGVRVLMLV WDDRTSVPVL KQDGLMATHD QETATYFDDS
301: EVHCVLCPRN PDDGRSIIQN IQIGTMFTHH QKIVVVDGEL PNGDTERRRI VSYIGGIDLC DGRYDTQFHP LFRTLDTAHH DDFHQPNFTG ATIQKGGPRE
401: PWHDIHCRIE GPAAWDVLFN FEQRWRKQGG KDLLMNLRDI ENIIIPPSPA MYPDDHDTWN VQVFRSIDGG AAFGFPDAPE EAAKSGLISG KDNIIDRSIQ
501: DGYINAIRRA NHFIYIENQY FLGSSFSWNS DDIKDEDINA LHLIPKELSL KIISKIEAGE RFTVYVVVPM WPEGLPESAS VQAILDWQRR TMKMMYTDII
601: QALKAKGIVA NPKDYLSFFC LGNRETKKTG EYEPSESPEP DSDYQKAQEA RRFMIYVHAK MMIVDDEYII IGSANINQRS MDGARDSEIA MGAYQPFHLC
701: VKEPARGQVH GFRMALWYEH LGMLDNSFLQ PESVECIRKV NKIGDKYWDM YSSESLIHDL PGHLLTYPIG ITENGEVTGI PGVECFPDTK APVLGTKSNF
801: LPPILTT

Best Arabidopsis Sequence Match ( AT3G15730.1 )
(BLAST)

001: MAQHLLHGTL HATIYEVDAL HGGGVRQGFL GKILANVEET IGVGKGETQL YATIDLQKAR VGRTRKIKNE PKNPKWYESF HIYCAHLASD IIFTVKDDNP
101: IGATLIGRAY IPVDQVINGE EVDQWVEILD NDRNPIQGGS KIHVKLQYFH VEEDRNWNMG IKSAKFPGVP YTFFSQRQGC KVSLYQDAHI PDNFVPRIPL
201: AGGKNYEPQR CWEDIFDAIS NAKHLIYITG WSVYAEIALV RDSRRPKPGG DVTIGELLKK KASEGVRVLL LVWDDRTSVD VLKKDGLMAT HDEETENFFR
301: GSDVHCILCP RNPDDGGSIV QSLQISTMFT HHQKIVVVDS EMPSRGGSEM RRIVSFVGGI DLCDGRYDTP FHSLFRTLDT VHHDDFHQPN FTGAAITKGG
401: PREPWHDIHS RLEGPIAWDV MYNFEQRWSK QGGKDILVKL RDLSDIIITP SPVMFQEDHD VWNVQLFRSI DGGAAAGFPE SPEAAAEAGL VSGKDNIIDR
501: SIQDAYIHAI RRAKDFIYVE NQYFLGSSFA WAADGITPED INALHLIPKE LSLKIVSKIE KGEKFRVYVV VPMWPEGLPE SGSVQAILDW QRRTMEMMYK
601: DVIQALRAQG LEEDPRNYLT FFCLGNREVK KDGEYEPAEK PDPDTDYMRA QEARRFMIYV HTKMMIVDDE YIIIGSANIN QRSMDGARDS EIAMGGYQPH
701: HLSHRQPARG QIHGFRMSLW YEHLGMLDET FLDPSSLECI EKVNRISDKY WDFYSSESLE HDLPGHLLRY PIGVASEGDI TELPGFEFFP DTKARILGTK
801: SDYLPPILTT

Arabidopsis Description

PLDALPHA1Phospholipase D alpha 1 [Source:UniProtKB/Swiss-Prot;Acc:Q38882]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.