Factsheet for PGSC0003DMT400011523

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103910.1.1	Tomato	cytosol	77.69	95.41
VIT_12s0035g00200.t01	Wine grape	cytosol, nucleus, peroxisome	53.62	72.63
GSMUA_Achr7P23470_001	Banana	cytosol	60.05	65.31
KRH59149	Soybean	cytosol	64.6	64.53
KRH43039	Soybean	cytosol	63.9	63.83
PGSC0003DMT400025590	Potato	cytosol	58.88	62.15
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	22.2	62.09
EER98315	Sorghum	cytosol	60.4	61.62
Os07t0260400-01	Rice	cytosol, plasma membrane	60.05	61.34
PGSC0003DMT400000378	Potato	cytosol	18.57	60.69
HORVU5Hr1G060030.2	Barley	cytosol	59.46	60.67
TraesCS5B01G200600.1	Wheat	cytosol	59.58	60.35
TraesCS5A01G202000.1	Wheat	cytosol	59.11	60.31
PGSC0003DMT400009253	Potato	cytosol	18.34	60.15
TraesCS5D01G208300.2	Wheat	cytosol	59.23	60.0
TraesCS5D01G524600.1	Wheat	cytosol	57.94	59.05
TraesCS5B01G525600.1	Wheat	cytosol	57.59	58.14
Zm00001d005484_P003	Maize	cytosol	57.59	56.73
PGSC0003DMT400058531	Potato	plastid	54.09	54.53
TraesCS4A01G347800.3	Wheat	cytosol, nucleus, peroxisome	41.0	54.25
PGSC0003DMT400009250	Potato	cytosol	34.81	53.89
PGSC0003DMT400024828	Potato	cytosol	6.89	46.46
PGSC0003DMT400006661	Potato	cytosol	31.19	46.43
PGSC0003DMT400024831	Potato	extracellular	43.11	45.72
PGSC0003DMT400001650	Potato	cytosol, plastid	43.11	45.5
PGSC0003DMT400073469	Potato	cytosol	42.29	44.75
PGSC0003DMT400020297	Potato	cytosol	42.06	43.96

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.3	InterPro:C2_dom
InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0046470	GO:GO:0070290	InterPro:IPR000008
InterPro:IPR001736	InterPro:IPR035892	UniProt:M0ZZP4	PFAM:PF00168	PFAM:PF00614	PFAM:PF12357
EnsemblPlantsGene:PGSC0003DMG400004533	PGSC:PGSC0003DMG400004533	EnsemblPlants:PGSC0003DMT400011523	PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C
InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50004	PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF60
SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF56024	UniParc:UPI000294D338	SEG:seg

Description

Phospholipase d beta [Source:PGSC_GENE;Acc:PGSC0003DMG400004533]

Coordinates

chr1:-:80547778..80553251

Molecular Weight (calculated)

95757.1 Da

IEP (calculated)

6.741

GRAVY (calculated)

-0.334

Length

856 amino acids

Sequence
(BLAST)

001: MIHSVDNWLQ RQASAPVAGV PGMPLRSSDN VHDLTGNAVL LHGELDLCII EACSLPNLDA KCLPMFSWKS KDSTNASGLV DTSDPYVSVC LAGASIARTA
101: VIPNDENPTW NERLCIPVAH AVDKVEFIVK DNDKVGAELI GIVAIPSSRI AEGNRINGWF PICGSSGAPL ETDAQLHLSI HYTPATENPL YKNGVGNEAD
201: QKGVPHTYFP LRKGGDVTLY QDAHAPDETL PEILLDNGKV FKHNKCWEDI CHAMLEAQHL IYIVGWSVYH LVRIIREPTR PVPSSGWLEL GEMLKYKSQE
301: GVRVILLIWD DKTSNDDLFL KTEGVMQTHD EETKKFFKHS SVHCILCPRS ASSKLSIFKQ QVVGNIFTHH QKCVIVDTQA AGNDRKITAF VGGLDLCDGR
401: YDTPEHRLFS DLDTVFENDV HNPTFTSSSG GPREPWHDLH SKIEGPAAYD VLINFEQRYR KAIKWIRIKK CKPGLDSLLK LERIPSIHMP AAGPDGDQVV
501: HVTKEEDPEN WHVQVFRSID SGSVKGFPKD AKEARAQNLV SGKNLRIDRS IHLAYVKSIR SAQHFIYVEN QYFLGSSYCW PSYRNAGANN LVPMEIALKI
601: ASKIAASEPF AAYIVIPMWP EGIPTSNAVQ EILFWQGQTM SMMYKIIAQA LENAGISQFF HPQDYLNFYC LGNREAKKRG GDGDNPTPQE HTHELAQKFR
701: RFMIYVHSKG MIVDDEYVLL GSANINQRSL SGSRDTEIAM GAYQPHYTWA KKEAHPHGQV YGYRMSLWAE HLGRVEDGFM DPQTIECVRR VNKIARRNWQ
801: AFVADEYKPM KGHLMQYPVH VSKNGEVTAL PGFECFPDVG GKILGAPTNL PDALTT

Best Arabidopsis Sequence Match ( AT4G35790.2 )
(BLAST)

001: MAEKVSEDVM LLHGDLDLKI VKARRLPNMD MFSEHLRRLF TACNACARPT DTDDVDPRDK GEFGDKNIRS HRKVITSDPY VTVVVPQATL ARTRVLKNSQ
101: EPLWDEKFNI SIAHPFAYLE FQVKDDDVFG AQIIGTAKIP VRDIASGERI SGWFPVLGAS GKPPKAETAI FIDMKFTPFD QIHSYRCGIA GDPERRGVRR
201: TYFPVRKGSQ VRLYQDAHVM DGTLPAIGLD NGKVYEHGKC WEDICYAISE AHHMIYIVGW SIFHKIKLVR ETKVPRDKDM TLGELLKYKS QEGVRVLLLV
301: WDDKTSHDKF GIKTPGVMGT HDEETRKFFK HSSVICVLSP RYASSKLGLF KQQVVGTLFT HHQKCVLVDT QAVGNNRKVT AFIGGLDLCD GRYDTPEHRI
401: LHDLDTVFKD DFHNPTFPAG TKAPRQPWHD LHCRIDGPAA YDVLINFEQR WRKATRWKEF SLRLKGKTHW QDDALIRIGR ISWILSPVFK FLKDGTSIIP
501: EDDPCVWVSK EDDPENWHVQ IFRSIDSGSV KGFPKYEDEA EAQHLECAKR LVVDKSIQTA YIQTIRSAQH FIYIENQYFL GSSYAWPSYR DAGADNLIPM
601: ELALKIVSKI RAKERFAVYV VIPLWPEGDP KSGPVQEILY WQSQTMQMMY DVIAKELKAV QSDAHPLDYL NFYCLGKREQ LPDDMPATNG SVVSDSYNFQ
701: RFMIYVHAKG MIVDDEYVLM GSANINQRSM AGTKDTEIAM GAYQPNHTWA HKGRHPRGQV YGYRMSLWAE HLGKTGDEFV EPSDLECLKK VNTISEENWK
801: RFIDPKFSEL QGHLIKYPLQ VDVDGKVSPL PDYETFPDVG GKIIGAHSMA LPDTLTT

Arabidopsis Description

PLDDELTAPhospholipase D delta [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.