Factsheet for VIT_12s0035g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
vacuole 1
peroxisome 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P23470_001	Banana	cytosol	71.99	57.81
KRH59149	Soybean	cytosol	77.06	56.83
KRH43039	Soybean	cytosol	76.9	56.71
Solyc10g024370.1.1	Tomato	cytosol	71.2	53.64
PGSC0003DMT400011523	Potato	cytosol	72.63	53.62
Os07t0260400-01	Rice	cytosol, plasma membrane	70.09	52.86
TraesCS4A01G347800.3	Wheat	cytosol, nucleus, peroxisome	53.8	52.55
EER98315	Sorghum	cytosol	69.62	52.44
TraesCS5D01G524600.1	Wheat	cytosol	69.62	52.38
HORVU5Hr1G060030.2	Barley	cytosol	68.99	51.97
TraesCS5D01G208300.2	Wheat	cytosol	68.83	51.48
TraesCS5B01G525600.1	Wheat	cytosol	68.99	51.42
TraesCS5A01G202000.1	Wheat	cytosol	68.04	51.25
TraesCS5B01G200600.1	Wheat	cytosol	68.2	51.01
VIT_18s0001g00770.t01	Wine grape	nucleus	70.09	50.63
VIT_00s0264g00100.t01	Wine grape	cytosol	68.83	49.83
Solyc01g103910.1.1	Tomato	cytosol	54.11	49.07
Zm00001d005484_P003	Maize	cytosol	65.03	47.3
VIT_02s0025g04620.t01	Wine grape	cytosol	57.75	42.94
VIT_04s0008g05450.t01	Wine grape	cytosol	49.21	40.08
VIT_11s0016g05370.t01	Wine grape	cytosol	51.27	39.85
VIT_09s0002g06760.t01	Wine grape	cytosol	50.63	39.41
VIT_11s0016g05360.t01	Wine grape	cytosol	50.79	39.24
VIT_09s0002g02390.t01	Wine grape	cytosol	43.04	36.17
VIT_15s0048g01160.t01	Wine grape	cytosol	56.96	33.12
VIT_00s0264g00090.t01	Wine grape	cytosol	10.92	21.84
VIT_05s0077g01830.t01	Wine grape	cytosol	28.32	16.1

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	EntrezGene:100261019	wikigene:100261019	Gene3D:3.30.870.10	MapMan:50.3.1
ProteinID:CCB55085	ProteinID:CCB55085.1	UniProt:F6HK82	EMBL:FN595990	GO:GO:0003674	GO:GO:0003824
GO:GO:0004630	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787
GO:GO:0046470	GO:GO:0070290	InterPro:IPR001736	EntrezGene:LOC100261019	wikigene:LOC100261019	PFAM:PF00614
PFAM:PF12357	PFAM:PF13091	InterPro:PLD-like_dom	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam
PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF112	SMART:SM00155	SUPFAM:SSF56024	UniParc:UPI0002108DF5
ArrayExpress:VIT_12s0035g00200	EnsemblPlantsGene:VIT_12s0035g00200	EnsemblPlants:VIT_12s0035g00200.t01	RefSeq:XP_002266693	RefSeq:XP_002266693.2	SEG:seg

Description

No Description!

Coordinates

chr12:-:19425185..19446960

Molecular Weight (calculated)

71743.4 Da

IEP (calculated)

7.255

GRAVY (calculated)

-0.416

Length

632 amino acids

Sequence
(BLAST)

001: MLPEILLDGG KIFQQGQCWE EICHAMLEAH HLIYIIGWSI FHPVKLLREP TKPVPAGGEL SLGELLKYKS EEGVRVLMLI WDDKTSHDRL LFKTEGVMQT
101: HDEETRKFFK HSGVHCVLSP RYASNKLSIF KQQVVGTLFT HHQKCVLLDT QAPGNNRKIT AFIGGLDLCD GRYDTPEHRL FSDLDTVFSN DFHNPTFPSR
201: ARGPRQPWHD LHCKVEGPAA YDIMTNFEQR WRKAAKWRDF RLKKVTHWHE DALIRLDRIS WIITPSSGPT GDHAVRVTTE EDPETWHVQV FRSIDSGSVR
301: GFPKLVQDAE AQNLVCGKNL KIDRSIHAAY VKAIRSAQHF IYIENQYFLG SAYHWPSYKN AGADNLIPME LALKISSKIS ANEHFRVYIV VPMWPEGVPT
401: SASVQEILFW QGQTMSMMYQ IIGQAIHKAG LSDTHHPQDY LNFYCLGKRE ASSTESSAQT SNSSENRALG LAQKFRRFMI YVHAKGMIVD DEYVLIGSAN
501: INQRSLDGSR DTEIAMGAYQ PSYTWSGKKT HPHGQVYGYR MSLWAEHLGT LEDSFCQPES LECIRQVNSI AKNNWQIYAA DENKEMTGHL MQYPIQVSKN
601: GNVSTLPGHE CFPDVGGKVL GSPTNLPDAL TT

Best Arabidopsis Sequence Match ( AT4G35790.2 )
(BLAST)

001: MAEKVSEDVM LLHGDLDLKI VKARRLPNMD MFSEHLRRLF TACNACARPT DTDDVDPRDK GEFGDKNIRS HRKVITSDPY VTVVVPQATL ARTRVLKNSQ
101: EPLWDEKFNI SIAHPFAYLE FQVKDDDVFG AQIIGTAKIP VRDIASGERI SGWFPVLGAS GKPPKAETAI FIDMKFTPFD QIHSYRCGIA GDPERRGVRR
201: TYFPVRKGSQ VRLYQDAHVM DGTLPAIGLD NGKVYEHGKC WEDICYAISE AHHMIYIVGW SIFHKIKLVR ETKVPRDKDM TLGELLKYKS QEGVRVLLLV
301: WDDKTSHDKF GIKTPGVMGT HDEETRKFFK HSSVICVLSP RYASSKLGLF KQQVVGTLFT HHQKCVLVDT QAVGNNRKVT AFIGGLDLCD GRYDTPEHRI
401: LHDLDTVFKD DFHNPTFPAG TKAPRQPWHD LHCRIDGPAA YDVLINFEQR WRKATRWKEF SLRLKGKTHW QDDALIRIGR ISWILSPVFK FLKDGTSIIP
501: EDDPCVWVSK EDDPENWHVQ IFRSIDSGSV KGFPKYEDEA EAQHLECAKR LVVDKSIQTA YIQTIRSAQH FIYIENQYFL GSSYAWPSYR DAGADNLIPM
601: ELALKIVSKI RAKERFAVYV VIPLWPEGDP KSGPVQEILY WQSQTMQMMY DVIAKELKAV QSDAHPLDYL NFYCLGKREQ LPDDMPATNG SVVSDSYNFQ
701: RFMIYVHAKG MIVDDEYVLM GSANINQRSM AGTKDTEIAM GAYQPNHTWA HKGRHPRGQV YGYRMSLWAE HLGKTGDEFV EPSDLECLKK VNTISEENWK
801: RFIDPKFSEL QGHLIKYPLQ VDVDGKVSPL PDYETFPDVG GKIIGAHSMA LPDTLTT

Arabidopsis Description

PLDDELTAPhospholipase D delta [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.