Factsheet for VIT_04s0008g05450.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g06760.t01	Wine grape	cytosol	68.04	65.02
CDX88175	Canola	cytosol	60.82	63.7
CDY70643	Canola	cytosol, peroxisome	17.27	62.91
VIT_11s0016g05370.t01	Wine grape	cytosol	65.72	62.73
KRH52443	Soybean	cytosol	65.85	61.86
VIT_11s0016g05360.t01	Wine grape	cytosol	64.69	61.37
CDY05351	Canola	cytosol	63.53	60.49
CDY05490	Canola	cytosol	63.53	60.49
CDX80505	Canola	cytosol	60.44	60.13
Bra020497.1-P	Field mustard	cytosol	63.53	59.98
KRH52444	Soybean	cytosol, plastid	63.4	59.93
PGSC0003DMT400020297	Potato	cytosol	63.14	59.83
AT5G25370.2	Thale cress	cytosol	63.02	59.63
KRH61774	Soybean	cytosol	26.03	57.88
Solyc12g011170.1.1	Tomato	cytosol	62.89	57.55
Bra009836.1-P	Field mustard	cytosol	61.21	50.97
VIT_12s0035g00200.t01	Wine grape	cytosol, nucleus, peroxisome	40.08	49.21
VIT_09s0002g02390.t01	Wine grape	cytosol	43.04	44.41
VIT_18s0001g00770.t01	Wine grape	nucleus	48.32	42.86
VIT_02s0025g04620.t01	Wine grape	cytosol	46.39	42.35
VIT_00s0264g00100.t01	Wine grape	cytosol	47.55	42.27
VIT_15s0048g01160.t01	Wine grape	cytosol	46.13	32.93
VIT_00s0264g00090.t01	Wine grape	cytosol	12.63	31.01
VIT_05s0077g01830.t01	Wine grape	cytosol	28.22	19.69

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	EntrezGene:100257647	wikigene:100257647	Gene3D:2.60.40.150	Gene3D:3.30.870.10
MapMan:5.7.2.4.1	InterPro:C2_dom	InterPro:C2_domain_sf	ProteinID:CCB46803	ProteinID:CCB46803.1	UniProt:F6H325
EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0006629	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009414	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987
GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0046466	GO:GO:0046470	GO:GO:0070290
InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	EntrezGene:LOC100257647	wikigene:LOC100257647	PFAM:PF00168
PFAM:PF00614	PFAM:PF12357	PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam
InterPro:PLipase_D_pln	PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF114	SMART:SM00155	SUPFAM:SSF49562
SUPFAM:SSF56024	UniParc:UPI0002108CD1	ArrayExpress:VIT_04s0008g05450	EnsemblPlantsGene:VIT_04s0008g05450	EnsemblPlants:VIT_04s0008g05450.t01	RefSeq:XP_002282658
RefSeq:XP_002282658.1	:	:	:	:	:

Description

Phospholipase D [Source:UniProtKB/TrEMBL;Acc:F6H325]

Coordinates

chr4:+:4894521..4897030

Molecular Weight (calculated)

88673.9 Da

IEP (calculated)

6.796

GRAVY (calculated)

-0.371

Length

776 amino acids

Sequence
(BLAST)

001: MVLCRPEVIG SKLYATVDLE KARVARTRLI ENRAYSKPRW FESFRIYCAH RISNIIFTIK EDNPVGARLI GRAYVPVEAI KSGHEVDLQV EILDEDRNPL
101: PGHSRIHVKL HFFHAKKQSD WSKGILNPEL GEVPCTFFMQ RQGCKVSLYQ DAHVPHGGKP QFPLSGGRFH EYHRCWEDIF YAIYRAQHLI YITGWSVYTK
201: ITLVRDSMEP KPAQIMMTLG ELLKLKADQG VRVLMLIWDD RTSVEALKKD GLMETHDQET ADYFRDTKVR CVLCPRYSDR GRSTVQGFET STMFTHHQKT
301: VVVDSEMADI GYEKRRIVSF VGGIDLCGGR YDTQEHPLFR TLGTIHHDDF HQPNFPGASI TKGGPREPWH DIHCRLEGAV AWDVLYNFEQ RWRKQVGEDG
401: LFPLSKLEQI TVRPSPVTTL EDPETWNVQL FRSIDGGAAA FPFPEKPREA ADRGLITAKN SLIDRSIQDA YINAIRRARH FIYIENQYFI GSSFDWAAKD
501: IKVEDINALN LIPKELSLKI VSKIEAGERF TVYIVIPLWP EGIPESASVQ AILDWQRRTM EMMYTDIVQA LQARGIHANP RDYLTFFCLG NRELINADEY
601: KPKEKPAEGS DYMRAQQSRR FMIYVHSKMM IVDDEYIIIG SANINQRSMD GGRDTEIAMG GYQPHHLAAT EEGGRGAIHG FRLALWYEHL GGHDASFLHP
701: ESVECVRVVN ESAERNWRAY SSDTLVADLP GHLLSYPVQV NQNGTVTALP ETEFFPDTKA RVLGTVSEFL PPILTT

Best Arabidopsis Sequence Match ( AT3G15730.1 )
(BLAST)

001: MAQHLLHGTL HATIYEVDAL HGGGVRQGFL GKILANVEET IGVGKGETQL YATIDLQKAR VGRTRKIKNE PKNPKWYESF HIYCAHLASD IIFTVKDDNP
101: IGATLIGRAY IPVDQVINGE EVDQWVEILD NDRNPIQGGS KIHVKLQYFH VEEDRNWNMG IKSAKFPGVP YTFFSQRQGC KVSLYQDAHI PDNFVPRIPL
201: AGGKNYEPQR CWEDIFDAIS NAKHLIYITG WSVYAEIALV RDSRRPKPGG DVTIGELLKK KASEGVRVLL LVWDDRTSVD VLKKDGLMAT HDEETENFFR
301: GSDVHCILCP RNPDDGGSIV QSLQISTMFT HHQKIVVVDS EMPSRGGSEM RRIVSFVGGI DLCDGRYDTP FHSLFRTLDT VHHDDFHQPN FTGAAITKGG
401: PREPWHDIHS RLEGPIAWDV MYNFEQRWSK QGGKDILVKL RDLSDIIITP SPVMFQEDHD VWNVQLFRSI DGGAAAGFPE SPEAAAEAGL VSGKDNIIDR
501: SIQDAYIHAI RRAKDFIYVE NQYFLGSSFA WAADGITPED INALHLIPKE LSLKIVSKIE KGEKFRVYVV VPMWPEGLPE SGSVQAILDW QRRTMEMMYK
601: DVIQALRAQG LEEDPRNYLT FFCLGNREVK KDGEYEPAEK PDPDTDYMRA QEARRFMIYV HTKMMIVDDE YIIIGSANIN QRSMDGARDS EIAMGGYQPH
701: HLSHRQPARG QIHGFRMSLW YEHLGMLDET FLDPSSLECI EKVNRISDKY WDFYSSESLE HDLPGHLLRY PIGVASEGDI TELPGFEFFP DTKARILGTK
801: SDYLPPILTT

Arabidopsis Description

PLDALPHA1Phospholipase D alpha 1 [Source:UniProtKB/Swiss-Prot;Acc:Q38882]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.