Factsheet for PGSC0003DMT400020297

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
extracellular 1
cytosol 2
endoplasmic reticulum 1
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g011170.1.1	Tomato	cytosol	97.56	94.22
CDY70643	Canola	cytosol, peroxisome	16.61	63.85
PGSC0003DMT400073469	Potato	cytosol	62.88	63.66
VIT_04s0008g05450.t01	Wine grape	cytosol	59.83	63.14
CDX88175	Canola	cytosol	57.02	63.02
PGSC0003DMT400024831	Potato	extracellular	61.66	62.58
PGSC0003DMT400024828	Potato	cytosol	9.65	62.2
KRH52443	Soybean	cytosol	62.64	62.11
CDY05490	Canola	cytosol	61.42	61.72
CDX80505	Canola	cytosol	58.73	61.67
CDY05351	Canola	cytosol	61.05	61.35
Bra020497.1-P	Field mustard	cytosol	61.54	61.31
PGSC0003DMT400001650	Potato	cytosol, plastid	60.44	61.04
AT5G25370.2	Thale cress	cytosol	60.68	60.61
KRH52444	Soybean	cytosol, plastid	60.32	60.17
KRH61774	Soybean	cytosol	23.69	55.59
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	19.78	52.94
Bra009836.1-P	Field mustard	cytosol	58.61	51.5
PGSC0003DMT400000378	Potato	cytosol	16.36	51.15
PGSC0003DMT400006661	Potato	cytosol	35.53	50.61
PGSC0003DMT400009253	Potato	cytosol	16.0	50.19
PGSC0003DMT400025590	Potato	cytosol	43.59	44.02
PGSC0003DMT400011523	Potato	cytosol	43.96	42.06
PGSC0003DMT400058531	Potato	plastid	42.86	41.34
PGSC0003DMT400009250	Potato	cytosol	23.81	35.26

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	EntrezGene:102591907	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.1
InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0006629	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009414	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737
GO:GO:0009987	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0046466	GO:GO:0046470
GO:GO:0070290	InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	UniProt:M1AD93	PFAM:PF00168
PFAM:PF00614	PFAM:PF12357	EnsemblPlantsGene:PGSC0003DMG400007848	PGSC:PGSC0003DMG400007848	EnsemblPlants:PGSC0003DMT400020297	PIRSF:PIRSF036470
InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50035	PANTHER:PTHR18896
PANTHER:PTHR18896:SF109	SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF56024	UniParc:UPI0002949330
RefSeq:XP_006350007.1	SEG:seg	:	:	:	:

Description

Phospholipase D [Source:PGSC_GENE;Acc:PGSC0003DMG400007848]

Coordinates

chr12:-:1189936..1194359

Molecular Weight (calculated)

93318.3 Da

IEP (calculated)

6.837

GRAVY (calculated)

-0.392

Length

819 amino acids

Sequence
(BLAST)

001: MGPRLLHGTL HATIYEIDKI RTGCADCCGP TSPQKLTKRV LNNVKKLFFC APKISATKLY ATIDLDKARV GRTRIAENEP SNPHWNDTFR FYCAHEVSNI
101: IFTVKDENPV SATLIGRAYL PVEEVLNRYI VDRWVPIVDE ERHPISGHSK IHVRLQFYSV KQDSNWSRGI TSPAFGGVPY TFFKERQGCQ VTLYPDADIS
201: DDDITNYLKS QGLFEPQRCW EDIFDAINNA KHMIYIAGWS VYTKITLIRN PKRPKVGGEL TLGELLKKKA SEGVNVLLLV WDDITSDEVL KRDGLMSTHD
301: QETADYFKNT DVHCCLCPRN ADSGKTVIQG FQVGTMFTHH QKTIVVDTEI PGGMSHKRMI VSFLGGIDLC DGRYDTRDHS LFRTLDTVHK QDFYQPTFPG
401: SSIAKGGPRE PWHDIHCRLE GPVAWDVLYN FEQRWRKQIG NRFIYSMNEL DKFIIRPTEV TASRDRETWN VQIFRSIDGG AVTDFPVNPE EASEVGLVTG
501: KNNVIDQSIH DAYISAIRRA KNFIYIENQY FIGSCYGWKP ANDIKLEDIG ALHLIPKEIS LKIVSKIQAG ERFTVYIVLP MWPEGIPESD SVQAILDWQK
601: RTMEMMYTDI CNALKAKGNT TADPREYLTF FCLGNREVEK LGEYKPPQKP VPDTNYARAQ EFRRFMIYVH SKLMIVDDEY IIIGSANINQ RSMDGARDSE
701: IAMGGYQPYH LASNQPPRGK IYGFRMSLWC EHLNYADDSF ADPSSLECVR KVNGMAEESW KLYSSDTFDL DLPGHLLRYP IDISNTGQIT TLPGFKFFPD
801: TKAAILGNKS QYLPPILTT

Best Arabidopsis Sequence Match ( AT5G25370.2 )
(BLAST)

001: MTEQLLLHGT LEVKIYRIDK LHQRSRFNLC GKGNKEPTGK KTQSQIKRLT DSCTSLFGGH LYATIDLDRS RVARTMMRRH PKWLQSFHVY TAHSISKIIF
101: TVKEDEPVSA SLIGRAYLPV TEVITGQPID RWLDILDENR RPIQGGSKLH VRVKFTHVTQ DVNWNKGIIL PSFNGVPNAY FNQREGCKVT LYQDAHVLNE
201: YPDVTLTGGQ VIYKHHRCWE EIFDAIWEAK HLIYIAGWSV NTDVTLVRDP KRTRPGGDLK LGELLKKKAE ENVTVLMLVW DDRTSHEVFK RDGLMMTHDQ
301: ETYDYFKNTK VRCVLCPRNP DNGDSIVQGF EVATMFTHHQ KTIVVDSEVD GSLTKRRIVS FLGGIDLCDG RYDTVEHPLF GTLNSVHAND FHQPNFDGAS
401: IKKGGPREPW HDIHCKLDGP AAWDVLYNFE QRWMKQGSGR RYLISMAQLA EITVPPLPIV QPDNEEGWTV QVFRSIDDGA VEGFPEDPRE AASIGLISGK
501: DNVIERSIQD AYVNAIRRAK NFIYIENQYF LGSSFGWNSR DINLNEINAL QLIPKEISLK IVSKIEAGER FSVYIVIPLW PEGKPGSASV QAILDWQRRT
601: MEMMYTDIII ALRKKGLDAN PRDYLTFFCL GNREKGKVGE YLPPEKPEAN SDYARAQESR RFMIYVHSKM MIVDDEYIII GSANINQRSM DGGRDTEIAM
701: GAYQPSHLLS TNNMRPVGQI FSFRISLWLE HLRVTTNAFQ CPESEECIRM VNATADELWG LYSAQEYPRN DDLPGHLLSY PISIGSNGEV TNLAGTEFFP
801: DTNAKVVGEK SNYLPPILTS

Arabidopsis Description

PLDALPHA3Phospholipase D alpha 3 [Source:UniProtKB/Swiss-Prot;Acc:P58766]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.