Factsheet for PGSC0003DMT400009253

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
vacuole 2
peroxisome 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006262_P001	Maize	cytoskeleton, cytosol, peroxisome	42.15	71.43
GSMUA_Achr9P21120_001	Banana	nucleus	55.94	57.94
PGSC0003DMT400000378	Potato	cytosol	56.7	56.49
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	56.32	48.04
PGSC0003DMT400024828	Potato	cytosol	20.69	42.52
Solyc02g083340.2.1	Tomato	nucleus	96.17	28.98
CDY42882	Canola	nucleus	32.57	26.4
GSMUA_Achr1P07360_001	Banana	cytosol	68.97	24.59
Bra010512.1-P	Field mustard	cytosol	68.97	22.3
VIT_00s0264g00100.t01	Wine grape	cytosol	73.18	21.88
PGSC0003DMT400025590	Potato	cytosol	67.82	21.82
GSMUA_Achr1P14920_001	Banana	plastid	65.13	21.41
Bra017730.1-P	Field mustard	cytosol	68.58	21.33
KRH76589	Soybean	extracellular	70.5	21.3
KRH28860	Soybean	mitochondrion	70.5	21.25
CDY67335	Canola	cytosol	68.97	20.79
AT4G35790.1	Thale cress	cytosol	68.58	20.62
CDX72557	Canola	cytosol	68.2	20.58
CDY41630	Canola	cytosol	68.2	20.53
PGSC0003DMT400006661	Potato	cytosol	45.21	20.52
GSMUA_Achr11P...	Banana	cytosol	65.13	20.43
Os09t0543100-02	Rice	plasma membrane	66.28	20.26
CDY47037	Canola	cytosol	68.58	20.23
Zm00001d006257_P009	Maize	cytosol	65.9	20.09
GSMUA_AchrUn_...	Banana	cytosol	65.13	19.81
KXG36094	Sorghum	cytosol	64.75	19.67
TraesCS5B01G336100.1	Wheat	cytosol	64.75	19.61
TraesCS5A01G337100.2	Wheat	cytosol	64.75	19.61
Zm00001d022594_P002	Maize	cytosol	64.37	18.98
PGSC0003DMT400011523	Potato	cytosol	60.15	18.34
PGSC0003DMT400058531	Potato	plastid	56.32	17.31
TraesCS5D01G341800.2	Wheat	cytosol	54.79	17.27
TraesCS6A01G071700.1	Wheat	cytosol, nucleus, plastid	54.79	16.46
TraesCS6B01G096200.1	Wheat	cytosol	54.41	16.42
HORVU6Hr1G012780.6	Barley	cytosol, nucleus, plastid	54.41	16.34
PGSC0003DMT400073469	Potato	cytosol	50.57	16.32
PGSC0003DMT400024831	Potato	extracellular	49.81	16.11
PGSC0003DMT400020297	Potato	cytosol	50.19	16.0
PGSC0003DMT400001650	Potato	cytosol, plastid	49.43	15.91
OQU84227	Sorghum	cytosol	55.56	15.78
Zm00001d015033_P001	Maize	extracellular, plastid, vacuole	55.17	15.47
HORVU5Hr1G084740.4	Barley	plastid	23.75	8.67
Os02t0120200-01	Rice	extracellular	9.2	2.64
PGSC0003DMT400009250	Potato	cytosol	0.77	0.36

Protein Annotations

EnsemblPlants:PGSC0003DMT400009253	EnsemblPlantsGene:PGSC0003DMG401003592	Gene3D:3.30.870.10	GO:GO:0003674	GO:GO:0003824	InterPro:IPR001736
InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	PANTHER:PTHR18896
PANTHER:PTHR18896:SF86	PFAM:PF00614	PFAM:PF12357	PFscan:PS50035	PGSC:PGSC0003DMG401003592	SMART:SM00155
SUPFAM:SSF56024	UniParc:UPI000296E960	UniProt:M0ZVV7	MapMan:50.3.1	:	:

Description

Phospholipase D delta isoform 1a [Source:PGSC_GENE;Acc:PGSC0003DMG401003592]

Coordinates

chr2:-:38969569..38972702

Molecular Weight (calculated)

29760.5 Da

IEP (calculated)

5.591

GRAVY (calculated)

-0.397

Length

261 amino acids

Sequence
(BLAST)

001: MELALKITSK IRARERFCVY VVMPMWPEGD PKSITVQEIL FWQSQTIQMM YQVIATELKS MQILDSHPQD YLNFYCLGNR EEIPGSIAQS SGNGDKVSDS
101: YKFQRFMIYV HAKGMIVDDE YVIVGSANIN QRSLAGSKDT EIAMGAYQPH YAWTEKQRHP QGQIYGYRMS LWAEHLGRIE ECFKEPEALT CVRKVNEVAE
201: ENWKSYTAEN FTQLQGHLLK YPIHVGADGN VGPLPEYENF PDVGGRILGN HAPTIPDVLT T

Best Arabidopsis Sequence Match ( AT4G00240.1 )
(BLAST)

001: MENYGWNYPY YPYRPPRPNP PYPAPPHHHG SMSHSGPLDH HHPPMSYYAS FDYQHQPPPP YPPVSYYASF SSHSDLSYSG RLDSSGHGFT STASPHSPGM
101: HIVPFGKASL KVLLLHGNLD IWVSCANNLP NLDLFHKTLG VVFGGMTNMI EGQLSKKITS DPYVSISVAG AVIGRTYVIS NSENPVWQQH FYVPVAHHAA
201: EVHFVVKDSD AVGSQLIGIV TIPVEQIYSG ARIEGTYSIR DSNGKPCKPG ATLSLSIQYT SMNKLSVYHS GVGAGPYYQG VPGTYFPLRE GGSVTLYQDA
301: HVPEGMLPGI KLGNGMCYEH GKCWHDMFHA ICQARRLIYI TGWSVWHNVR LVRDKEDPSS ECRLGELLRS KSQEGVRVLL LVWDDPTSQN ILGYMTDGVM
401: GTHDEETRRF FKDSSVQVLL CPRNAGKRHS WVKQREVGTI YTHHQKNLIV DADAGGNRRK IVAFVGGLDL CDGRYDTPQH PLFRTLQTDH NGDYHNPTFT
501: GNVSGCPREP WHDLHSKIDG PAAYDVLTNF EERWLKAAKP HRINKLKTSY DDALLRIDRI PDILRVLDAP TVSANDPEAW HVQIFRSIDS NSVKGFPKDP
601: KYATSKNLVC GKNVLIDMSI HTAYVKAIRA AQHFIYIENQ YFIGSSYDWN AHKDIGANNL IPMEIALKIA DKIRAKERFA AYIVIPMWPE GVPTGAATQR
701: ILYWQHKTMQ MMYGTIYNAL VEAGLEDEYS PQDYLNFFCL GNREMVNGNN ESGTGSASNE NTPQGLCRKS RRFMIYVHSK GMVVDDEYVV IGSANINQRS
801: MEGTRDTEIA MGAYQPQHTW ARRQSGPRGQ IYGYRMSLWA EHMALLDDCF VEPESLGCVR KVRTVAEENW EQFRSEEVSE MRGHLMKYPV EVDRKGKVRP
901: LPGSEEFPDV GGNVVGSFLA IQENLTI

Arabidopsis Description

PLDBETA2Phospholipase D beta 2 [Source:UniProtKB/Swiss-Prot;Acc:O23078]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.