Factsheet for Solyc02g083340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009250	Potato	cytosol	62.82	98.37
PGSC0003DMT400009253	Potato	cytosol	28.98	96.17
Solyc02g061850.2.1	Tomato	cytosol	78.98	80.47
KRH28860	Soybean	mitochondrion	69.98	69.98
VIT_00s0264g00100.t01	Wine grape	cytosol	70.44	69.87
KRH76589	Soybean	extracellular	69.63	69.79
Solyc04g082000.2.1	Tomato	cytosol	67.32	69.49
Zm00001d006262_P001	Maize	cytoskeleton, cytosol, peroxisome	12.36	69.48
AT4G35790.1	Thale cress	cytosol	69.28	69.12
CDX72557	Canola	cytosol	68.13	68.21
GSMUA_Achr1P07360_001	Banana	cytosol	57.62	68.17
Bra017730.1-P	Field mustard	cytosol	65.47	67.58
Bra010512.1-P	Field mustard	cytosol	62.7	67.29
CDY67335	Canola	cytosol	66.63	66.63
CDY47037	Canola	cytosol	68.01	66.55
CDY41630	Canola	cytosol	65.94	65.86
Os09t0543100-02	Rice	plasma membrane	64.67	65.57
GSMUA_AchrUn_...	Banana	cytosol	64.43	65.03
KXG36094	Sorghum	cytosol	64.43	64.96
GSMUA_Achr1P14920_001	Banana	plastid	59.24	64.61
Zm00001d006257_P009	Maize	cytosol	63.63	64.37
Solyc04g051140.1.1	Tomato	cytosol	14.9	64.18
TraesCS5B01G336100.1	Wheat	cytosol	63.16	63.46
TraesCS5A01G337100.2	Wheat	cytosol	62.93	63.23
GSMUA_Achr9P21120_001	Banana	nucleus	18.36	63.1
TraesCS5D01G341800.2	Wheat	cytosol	60.28	63.04
HORVU5Hr1G084740.4	Barley	plastid	51.04	61.82
Solyc01g103900.2.1	Tomato	cytosol	11.78	61.82
Zm00001d022594_P002	Maize	cytosol	61.55	60.23
GSMUA_Achr11P...	Banana	cytosol	57.85	60.22
Solyc01g103910.1.1	Tomato	cytosol	46.42	57.68
Solyc10g024370.1.1	Tomato	cytosol	55.77	57.57
Solyc08g080130.2.1	Tomato	nucleus	49.65	50.83
OQU84227	Sorghum	cytosol	52.42	49.4
Zm00001d015033_P001	Maize	extracellular, plastid, vacuole	52.19	48.55
TraesCS6B01G096200.1	Wheat	cytosol	48.38	48.44
Solyc01g091910.2.1	Tomato	plastid	49.88	48.27
TraesCS6A01G071700.1	Wheat	cytosol, nucleus, plastid	48.38	48.22
HORVU6Hr1G012780.6	Barley	cytosol, nucleus, plastid	47.46	47.3
Solyc06g068090.2.1	Tomato	plastid	42.03	44.99
Solyc03g116620.2.1	Tomato	plastid	42.03	44.88
Solyc08g066800.2.1	Tomato	plastid	41.8	44.86
Solyc08g045740.1.1	Tomato	cytosol	14.09	44.69
Solyc08g066790.2.1	Tomato	plastid	40.76	43.74
Solyc12g011170.1.1	Tomato	cytosol	41.11	41.98
CDY42882	Canola	nucleus	15.13	40.68
Solyc10g017650.1.1	Tomato	cytosol	49.65	38.43
Os02t0120200-01	Rice	extracellular	23.56	22.42
Solyc01g100020.2.1	Tomato	cytosol, nucleus, peroxisome	22.75	18.73
Solyc01g065720.2.1	Tomato	cytosol	22.29	17.45

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:3.30.870.10	MapMan:5.7.2.4.3	InterPro:C2_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004630	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016042
GO:GO:0016787	GO:GO:0046470	GO:GO:0070290	InterPro:IPR000008	InterPro:IPR001736	UniProt:K4BAK2
PFAM:PF00168	PFAM:PF00614	PFAM:PF12357	PFAM:PF13091	PIRSF:PIRSF036470	InterPro:PLD-like_dom
InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50004	PFscan:PS50035
PANTHER:PTHR18896	PANTHER:PTHR18896:SF86	SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF56024
EnsemblPlantsGene:Solyc02g083340.2	EnsemblPlants:Solyc02g083340.2.1	UniParc:UPI00027684C1	:	:	:

Description

Phospholipase D [Source:UniProtKB/TrEMBL;Acc:K4BAK2]

Coordinates

chr2:-:46779414..46787584

Molecular Weight (calculated)

98654.8 Da

IEP (calculated)

7.310

GRAVY (calculated)

-0.395

Length

866 amino acids

Sequence
(BLAST)

001: MAENSSQENF ICLHGDLELH IIQARHLPNM DLTSERIRRC FTACDVCRKP QTGSTADDGN GELPNVKSTD QKIHHRSIIT SDPYVAVCAP HTALARTRVI
101: PNSQNPVWDE HFRIPLAHPM DCLDFRVKDD DVFGAQVMGK VTIPAEKIAS GEVVSGWFPV IGASGKSPKP DTALRLWMKF VPYDTNPLYK RGIASDPQYL
201: GVRNTYFPLR KGSSVKLYQD AHVSDKFKLP EIQLENNTTF EHNKCWEDIC YAITEAHHLI YIVGWSVFHK VKLVREPTRP LPRGGDLTLG ELLKYKSQEG
301: VRVLLLVWDD KTSHDKFFIN TAGVMGTHDE ETRKFFKHSS VICVLSPRYA SSKLSLIKQQ VVGTMFTHHQ KCVLVDTQAP GNNRKVTAFL GGLDLCDGRY
401: DTPEHRLFHD LDTVFKDDVH QPTFPAGTKA PRQPWHDLHC RIDGPAVYDV LINFAQRWRK ATKWREFKFF KKTMSHWHDD AMLKIERISW ILSPAFAVLK
501: DSTAIPEDDP KLHVYGEDHS ENWHVQIFRS IDSGSVQGFP KTIDVAQAQN LVCSKNLMVD KSIEAAYIQA IRSAQHFIYI ENQYFLGSSY AWESYKDAGA
601: DHLIPMELAL KITSKIRARE RFCVYVVVPM WPEGDPKSIT MQEILFWQSQ TIQMMYQVIA TELKSMQILD SHPQDYLNFY CLGNREEIPG SIAQSSGNGD
701: KVSDSYKFQR FMIYVHAKGM IVDDEYVIMG SANINQRSLA GSKDTEIAMG AYQPHYAWTE KQRRPRGQIY GYRMSLWAEH LGRIEECFKE PEALTCVRKV
801: NEVAEGNWKS YTAEKFTQLH GHLLKYPIHV GADGKVGPLA EYENFPDVGG RILGNHAPTI PDVLTT

Best Arabidopsis Sequence Match ( AT4G35790.2 )
(BLAST)

001: MAEKVSEDVM LLHGDLDLKI VKARRLPNMD MFSEHLRRLF TACNACARPT DTDDVDPRDK GEFGDKNIRS HRKVITSDPY VTVVVPQATL ARTRVLKNSQ
101: EPLWDEKFNI SIAHPFAYLE FQVKDDDVFG AQIIGTAKIP VRDIASGERI SGWFPVLGAS GKPPKAETAI FIDMKFTPFD QIHSYRCGIA GDPERRGVRR
201: TYFPVRKGSQ VRLYQDAHVM DGTLPAIGLD NGKVYEHGKC WEDICYAISE AHHMIYIVGW SIFHKIKLVR ETKVPRDKDM TLGELLKYKS QEGVRVLLLV
301: WDDKTSHDKF GIKTPGVMGT HDEETRKFFK HSSVICVLSP RYASSKLGLF KQQVVGTLFT HHQKCVLVDT QAVGNNRKVT AFIGGLDLCD GRYDTPEHRI
401: LHDLDTVFKD DFHNPTFPAG TKAPRQPWHD LHCRIDGPAA YDVLINFEQR WRKATRWKEF SLRLKGKTHW QDDALIRIGR ISWILSPVFK FLKDGTSIIP
501: EDDPCVWVSK EDDPENWHVQ IFRSIDSGSV KGFPKYEDEA EAQHLECAKR LVVDKSIQTA YIQTIRSAQH FIYIENQYFL GSSYAWPSYR DAGADNLIPM
601: ELALKIVSKI RAKERFAVYV VIPLWPEGDP KSGPVQEILY WQSQTMQMMY DVIAKELKAV QSDAHPLDYL NFYCLGKREQ LPDDMPATNG SVVSDSYNFQ
701: RFMIYVHAKG MIVDDEYVLM GSANINQRSM AGTKDTEIAM GAYQPNHTWA HKGRHPRGQV YGYRMSLWAE HLGKTGDEFV EPSDLECLKK VNTISEENWK
801: RFIDPKFSEL QGHLIKYPLQ VDVDGKVSPL PDYETFPDVG GKIIGAHSMA LPDTLTT

Arabidopsis Description

PLDDELTAPhospholipase D delta [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.