Factsheet for Solyc03g116620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
vacuole 2
plastid 2
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001650	Potato	cytosol, plastid	95.31	95.31
Solyc06g068090.2.1	Tomato	plastid	79.9	80.1
KRH44445	Soybean	cytosol	74.23	76.4
KRH47460	Soybean	cytosol	76.08	76.27
VIT_09s0002g06760.t01	Wine grape	cytosol	75.96	75.86
KRH23570	Soybean	endoplasmic reticulum	75.09	75.46
AT1G52570.1	Thale cress	cytosol	74.23	74.32
Bra040960.1-P	Field mustard	cytosol	74.35	74.26
CDY20149	Canola	cytosol, nucleus, peroxisome	19.48	74.18
CDY47540	Canola	cytosol	74.23	74.14
AT3G15730.1	Thale cress	cytosol	73.98	74.07
Bra027209.1-P	Field mustard	cytosol	73.98	74.07
CDX97705	Canola	cytosol	73.98	74.07
CDY21865	Canola	cytosol	74.11	74.01
CDY30108	Canola	cytosol	73.74	73.83
Bra021132.1-P	Field mustard	cytosol	73.74	73.65
CDY60551	Canola	cytosol	73.49	73.4
Bra030375.1-P	Field mustard	cytosol	73.49	73.4
Solyc08g066800.2.1	Tomato	plastid	71.52	71.87
CDY63527	Canola	cytosol	29.59	71.86
Solyc08g066790.2.1	Tomato	plastid	70.9	71.25
CDX87920	Canola	cytosol	29.47	69.68
CDY20148	Canola	cytosol, peroxisome, plastid	34.16	69.42
Solyc12g011170.1.1	Tomato	cytosol	61.16	58.49
Solyc08g045740.1.1	Tomato	cytosol	17.76	52.75
Solyc01g103900.2.1	Tomato	cytosol	10.36	50.91
Solyc04g082000.2.1	Tomato	cytosol	46.49	44.93
Solyc08g080130.2.1	Tomato	nucleus	45.62	43.74
Solyc10g024370.1.1	Tomato	cytosol	45.01	43.5
Solyc02g061850.2.1	Tomato	cytosol	44.88	42.82
Solyc01g103910.1.1	Tomato	cytosol	36.5	42.47
Solyc02g083340.2.1	Tomato	nucleus	44.88	42.03
Solyc01g091910.2.1	Tomato	plastid	45.5	41.23
Solyc04g051140.1.1	Tomato	cytosol	8.88	35.82
Solyc10g017650.1.1	Tomato	cytosol	45.13	32.71
Solyc01g065720.2.1	Tomato	cytosol	25.28	18.54
Solyc01g100020.2.1	Tomato	cytosol, nucleus, peroxisome	23.67	18.25

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.1	InterPro:C2_dom
InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0046470	GO:GO:0070290	InterPro:IPR000008
InterPro:IPR001736	InterPro:IPR035892	UniProt:K4BLG4	PFAM:PF00168	PFAM:PF00614	PFAM:PF12357
PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50035
PANTHER:PTHR18896	PANTHER:PTHR18896:SF109	SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF56024
EnsemblPlantsGene:Solyc03g116620.2	EnsemblPlants:Solyc03g116620.2.1	UniParc:UPI0002768F2C	SEG:seg	:	:

Description

Phospholipase D [Source:UniProtKB/TrEMBL;Acc:K4BLG4]

Coordinates

chr3:+:65960094..65963571

Molecular Weight (calculated)

92643.5 Da

IEP (calculated)

5.438

GRAVY (calculated)

-0.518

Length

811 amino acids

Sequence
(BLAST)

001: MAPILLHGTL HVTIHEVDKL HGKQGRNFFS KIKDSVEEKV GMGKGASRIY ATVDLEKARV GRTRVIENEP NNPRWYESFH IYCAHMAKNV IFTVKDNNSI
101: GATLIGRAYL PVNDLLEGEE VDEWIEILDE DENPVEAGSK IHVTLQYFEI SRDRNWGRGI GTSKYPGVPY TFFPQRTGCR VSLYHDAHIP DNFIPKIPLS
201: GGKYYEPHRC WEDIFDAISN AKHMIYITGW SVYTEITLMR DSRREKPGGG DTVGELLKKK AKEGVKVLML VWDDRTSVRL LKKDGLMATH DEETEEYFKD
301: SDVHCVLCPR DPDDGGSIVK DIQTSTMFTH HQKIVIVDTV MPNGESETRR LMSFVGGLDL CDGRYDTPFH SLFRTLDTAH HDDFHQPNFA EASIDKGGPR
401: EPWHDIHSRV EGPIAWDVLY NFEQRWKKQG GKDILVDVRE LDNVIVPPSS VMYHDDPESW NVQLFRSIDG GAAFGFPDTP EESVKAGLVS GKNNIVDRSI
501: QDAYITAIRR AKNFIYIENQ YFLGSCYDWE DDDVKVEEVG ALHLIPKELT LKIVSKIEAG ERFTVYVLVP MWPEGIPDSA SVQAILYWQR RTMEMMYKHI
601: FKTLRDAGID DHPRNYLTFF CIGNREVKKS GEYEPSHEPE SDTDYRRAQE ARRFMIYVHS KMMIVDDEYI IVGSANINQR SMDGARDSEI AIGAYQPHNL
701: STNRQPARGQ IHGFRMALWY EHMGMLDDTF QHPESEDCVR KVNGIADKYW DLYTSESLET DLPGHLLRYP VGLTNDGEIT DLPGNGNEYF PDTKAKVIGT
801: KSDLLPPILT T

Best Arabidopsis Sequence Match ( AT1G52570.2 )
(BLAST)

001: MEECLLHGRL HATIYEVDHL HAEGGRSGFL GSILANVEET IGVGKGETQL YATIDLEKAR VGRTRKITKE PKNPKWFESF HIYCGHMAKH VIFTVKDANP
101: IGATLIGRGY IPVEDILHGE EVDRWVDILD NEKNPIAGGS KIHVKLQYFG VEKDKNWNRG IKSAKFPGVP YTFFSQRRGC KVSLYQDAHI PGNFVPKIPL
201: AGGKNYEPHR CWEDIFDAIT NAKHLIYITG WSVYTEISLV RDSRRPKQGG DVTVGELLKK KASEGVKVIL LVWDDRTSVD LLKKDGLMAT HDEETENFFR
301: GTDVNCILCP RNPDDGGSIV QNLQISTMFT HHQKIVVVDS EMPSGGSRSR RIVSFVGGLD LCDGRYDTPF HSLFRTLDTA HHDDFHQPNF TGAAITKGGP
401: REPWHDIHCR LEGPIAWDVL YNFEQRWSRQ GGKDILVKMR ELGDIIIPPS PVLFSEDHDV WNVQLFRSID GGAAAGFPDS PEAAAEAGLV SGKDNIIDRS
501: IQDAYIHAIR RAKDFIYIEN QYFLGSSFAW SADGIKPEEI NALHLIPKEL SLKIVSKIKA GEKFKVYVVV PMWPEGIPES GSVQAILDWQ KRTMEMMYKD
601: VIKALRENGL EGEDPRDYLT FFCLGNREVK KDGEYEPSEK PEPDTDYIRA QEARRFMIYV HTKMMIVDDE YIIIGSANIN QRSMDGARDS EIAMGGYQPY
701: HLSTRQPARG QIHGFRMSLW YEHLGMLDET FLDPSSQECI QKVNRVADKY WDLYSSESLE HDLPGHLLRY PIGIASEGNI TELPGCEFFP DTKARILGVK
801: SDYMPPILTT

Arabidopsis Description

PLDALPHA2Phospholipase D alpha 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.