Factsheet for Solyc01g103900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 3
peroxisome 1
plastid 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	peroxisome
Plant-mPloc:	plastid, vacuole
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g024370.1.1	Tomato	cytosol	83.64	16.45
Solyc04g082000.2.1	Tomato	cytosol	69.7	13.71
Solyc08g080130.2.1	Tomato	nucleus	64.85	12.65
Solyc02g061850.2.1	Tomato	cytosol	63.03	12.24
Solyc02g083340.2.1	Tomato	nucleus	61.82	11.78
Solyc01g091910.2.1	Tomato	plastid	62.42	11.51
Solyc08g066800.2.1	Tomato	plastid	53.94	11.03
Solyc06g068090.2.1	Tomato	plastid	53.33	10.88
Zm00001d023573_P002	Maize	plastid	23.64	10.77
Solyc08g066790.2.1	Tomato	plastid	52.12	10.66
Solyc12g011170.1.1	Tomato	cytosol	53.94	10.5
Solyc03g116620.2.1	Tomato	plastid	50.91	10.36
Solyc10g017650.1.1	Tomato	cytosol	63.64	9.38
TraesCS4A01G338500.1	Wheat	cytosol	4.85	6.25
Solyc01g100020.2.1	Tomato	cytosol, nucleus, peroxisome	29.7	4.66
Solyc01g065720.2.1	Tomato	cytosol	29.7	4.43
Solyc01g103910.1.1	Tomato	cytosol	7.88	1.87
Solyc08g045740.1.1	Tomato	cytosol	1.82	1.1
Solyc04g051140.1.1	Tomato	cytosol	0.61	0.5

Protein Annotations

EnsemblPlants:Solyc01g103900.2.1	EnsemblPlantsGene:Solyc01g103900.2	Gene3D:3.30.870.10	GO:GO:0003674	GO:GO:0003824	InterPro:IPR001736
InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	PANTHER:PTHR18896
PANTHER:PTHR18896:SF60	PFAM:PF00614	PFAM:PF12357	PFscan:PS50035	SMART:SM00155	SUPFAM:SSF56024
UniParc:UPI00027685F4	UniProt:K4B1W5	MapMan:50.3.1	:	:	:

Description

No Description!

Coordinates

chr1:-:92398985..92399815

Molecular Weight (calculated)

18773.6 Da

IEP (calculated)

8.230

GRAVY (calculated)

-0.448

Length

165 amino acids

Sequence
(BLAST)

001: MQELAQKFRR FMIYVHSKGM IVDDEYVLLG SANINQRSLS GSRDTEIAMG AYQPHYTWAK KEAHPHGQVY GYRMSLWAEH LGRVEEGFMD PQTIECVRRV
101: NKIARRNWQA FVADEYKPMK GHLMQYPVHV SKNGEVTALP GFECFPDVGG KILGAPTNLP DALTT

Best Arabidopsis Sequence Match ( AT4G11830.1 )
(BLAST)

001: MSMGGGSNHE FGQWLDQQLV PLATSSGSLM VELLHGRRIR KVDGEKSSKF TSDPYVTVSI SGAVIGRTFV ISNSENPVWM QHFDVPVAHS AAEVHFVVKD
101: NDPIGSKIIG VVGIPTKQLC SGNRIEGLFP ILNSSGKPCR KGAMLSLSIQ YTPMERMRLY QKGVGSGVEC VGVPGTYFPL RKGGRVTLYQ DAHVDDGTLP
201: SVHLDGGIQY RHGKCWEDMA DAIRRARRLI YITGWSVFHP VRLVRRNNDP TEGTLGELLK VKSQEGVRVL VLVWDDPTSM SFPGFSTKGL MNTSDEETRR
301: FFKHSSVQVL LCPRYGGKGH SFIKKSEVET IYTHHQKTMI VDAEAAQNRR KIVAFVGGLD LCNGRFDTPK HSLFGTLKTL HKDDFHNPNF VTTEDVGPRE
401: PWHDLHSKID GPAAYDVLAN FEERWMASKP RGIGKGRTSF DDSLLRINRI PDIMGLSEAS SANDNDPESW HVQVFRSIDS TSVKGFPKDP EEATGRNLLC
501: GKNILIDMSI HAAYVKAIRS AQHFIYIENQ YFLGSSFNWD SNKDLGANNL IPMEIALKIA NKIRARENFA AYIVIPMWPE GAPTSKPIQR ILYWQHKTMQ
601: MMYQTIYKAL LEVGLDGQLE PQDFLNFFCL GNREVGTREV PDGTVNVYNC PRKPPQPNAA QVQALKSRRF MIYVHSKGMV VDDEFVLIGS ANINQRSLEG
701: TRDTEIAMGG YQPHHSWAKK GSRPRGQIFG YRMSLWAEHL GFLEQEFEEP ENMECVRRVR QLSELNWGQY AAEEVTEMSG HLLKYPVQVD KTGKVSSLPG
801: CETFPDLGGK IIGSFLTLQE NLTI

Arabidopsis Description

PLDGAMMA2Phospholipase D gamma 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T051]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.