Factsheet for Solyc06g068090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
vacuole 2
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073469	Potato	cytosol	97.53	97.53
KRH44445	Soybean	cytosol	81.58	83.76
KRH47460	Soybean	cytosol	83.68	83.68
KRH23570	Soybean	endoplasmic reticulum	81.83	82.03
CDY20149	Canola	cytosol, nucleus, peroxisome	21.26	80.75
VIT_09s0002g06760.t01	Wine grape	cytosol	80.35	80.05
Solyc03g116620.2.1	Tomato	plastid	80.1	79.9
AT3G15730.1	Thale cress	cytosol	78.0	77.9
CDY21865	Canola	cytosol	78.12	77.83
AT1G52570.1	Thale cress	cytosol	77.87	77.78
Bra040960.1-P	Field mustard	cytosol	78.0	77.71
CDY47540	Canola	cytosol	77.87	77.59
Bra021132.1-P	Field mustard	cytosol	77.87	77.59
CDX97705	Canola	cytosol	77.26	77.16
Bra027209.1-P	Field mustard	cytosol	77.26	77.16
CDY30108	Canola	cytosol	77.13	77.04
CDY60551	Canola	cytosol	76.76	76.48
Bra030375.1-P	Field mustard	cytosol	76.64	76.35
Solyc08g066800.2.1	Tomato	plastid	75.77	75.96
Solyc08g066790.2.1	Tomato	plastid	73.79	73.98
CDY63527	Canola	cytosol	30.28	73.35
CDY20148	Canola	cytosol, peroxisome, plastid	34.86	70.68
CDX87920	Canola	cytosol	29.91	70.55
Solyc12g011170.1.1	Tomato	cytosol	63.91	60.97
Solyc08g045740.1.1	Tomato	cytosol	18.79	55.68
Solyc01g103900.2.1	Tomato	cytosol	10.88	53.33
Solyc04g082000.2.1	Tomato	cytosol	46.48	44.82
Solyc08g080130.2.1	Tomato	nucleus	45.61	43.62
Solyc10g024370.1.1	Tomato	cytosol	44.62	43.03
Solyc02g061850.2.1	Tomato	cytosol	44.62	42.47
Solyc02g083340.2.1	Tomato	nucleus	44.99	42.03
Solyc01g103910.1.1	Tomato	cytosol	35.23	40.89
Solyc01g091910.2.1	Tomato	plastid	44.5	40.22
Solyc04g051140.1.1	Tomato	cytosol	9.39	37.81
Solyc10g017650.1.1	Tomato	cytosol	44.5	32.17
Solyc01g100020.2.1	Tomato	cytosol, nucleus, peroxisome	23.61	18.16
Solyc01g065720.2.1	Tomato	cytosol	24.72	18.08

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.1	EMBL:AF201661
InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0046470	GO:GO:0070290
InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	PFAM:PF00168	PFAM:PF00614	PFAM:PF12357
PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50035
PANTHER:PTHR18896	PANTHER:PTHR18896:SF109	UniProt:Q9SDZ6	SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562
SUPFAM:SSF56024	EnsemblPlantsGene:Solyc06g068090.2	EnsemblPlants:Solyc06g068090.2.1	UniParc:UPI000009FBC5	SEG:seg	:

Description

Phospholipase D alpha (Fragment) [Source:UniProtKB/TrEMBL;Acc:Q9SDZ6]

Coordinates

chr6:+:42197587..42202093

Molecular Weight (calculated)

92205.3 Da

IEP (calculated)

5.375

GRAVY (calculated)

-0.447

Length

809 amino acids

Sequence
(BLAST)

001: MAQIQLHGTL HVTIFEVDNL QGEEEGGHFF SKIKQHFEET VGIGKGTPKL YATIDLEKAR VGRTRIIENE PKNPRWYESF HIYCAHMASN VIFTIKDDNP
101: FGASLIGRAY VPVEELLEGE EIDKWVEIMD KEMNPTAEGS KIHVKLQFFD VSRDPNWGRG IRSSRYPGVP YTFFAQRPGS RVSLYQDAHV PDNFIPKIPL
201: SGGKYYEPHR CWEDIFDAIT NAKHLIYITG WSVYTEIALV RDSRRQKPGG DIMLGELLKK KASEGVKVLM LVWDDRTSVG LLKKDGLMAT HDQETEQYFQ
301: GTDVNCVLCP RNPDNGGSFV QDIQISTMFT HHQKIIVVDS ALPSGELEKR RILSFVGGID LCDGRYDTPF HSLFRTLDTA HHDDFHQPNF ADGSITKGGP
401: REPWHDIHSR LEGPIAWDVL FNFEQRWRKQ GGKDILVNFR ELDDVIIPPS PVMYPDDHET WNVQLFRSID GGAAFGFPDT PEDAAKAGLV SGKDNIIDRS
501: IQDAYIHAIR RAKNFIYIEN QYFLGSCADW QCDDVKVEDI GALHVIPKEL ALKIVSKIEA GERFTVYVVV PMWPEGIPES ASVQAILDWQ RRTMEMMYKC
601: IVQAMNAKGI EEDPRNYLTF FCIGNREVKK SGEYEPSESP EPDSNYMRAQ EARRFMIYVH SKMMIVDDEY IIVGSANINQ RSMDGARDSE IAMGAYQPYH
701: LATSKPARGQ VHGFRMALWY EHLGMLDETF QHPESEECVR KVNQIADKYW DLYSSESLER DLPGHLLRYP IGVASEGDIT ELPGHEFFPD TKARVLGTKS
801: DYLPPNLTT

Best Arabidopsis Sequence Match ( AT1G52570.2 )
(BLAST)

001: MEECLLHGRL HATIYEVDHL HAEGGRSGFL GSILANVEET IGVGKGETQL YATIDLEKAR VGRTRKITKE PKNPKWFESF HIYCGHMAKH VIFTVKDANP
101: IGATLIGRGY IPVEDILHGE EVDRWVDILD NEKNPIAGGS KIHVKLQYFG VEKDKNWNRG IKSAKFPGVP YTFFSQRRGC KVSLYQDAHI PGNFVPKIPL
201: AGGKNYEPHR CWEDIFDAIT NAKHLIYITG WSVYTEISLV RDSRRPKQGG DVTVGELLKK KASEGVKVIL LVWDDRTSVD LLKKDGLMAT HDEETENFFR
301: GTDVNCILCP RNPDDGGSIV QNLQISTMFT HHQKIVVVDS EMPSGGSRSR RIVSFVGGLD LCDGRYDTPF HSLFRTLDTA HHDDFHQPNF TGAAITKGGP
401: REPWHDIHCR LEGPIAWDVL YNFEQRWSRQ GGKDILVKMR ELGDIIIPPS PVLFSEDHDV WNVQLFRSID GGAAAGFPDS PEAAAEAGLV SGKDNIIDRS
501: IQDAYIHAIR RAKDFIYIEN QYFLGSSFAW SADGIKPEEI NALHLIPKEL SLKIVSKIKA GEKFKVYVVV PMWPEGIPES GSVQAILDWQ KRTMEMMYKD
601: VIKALRENGL EGEDPRDYLT FFCLGNREVK KDGEYEPSEK PEPDTDYIRA QEARRFMIYV HTKMMIVDDE YIIIGSANIN QRSMDGARDS EIAMGGYQPY
701: HLSTRQPARG QIHGFRMSLW YEHLGMLDET FLDPSSQECI QKVNRVADKY WDLYSSESLE HDLPGHLLRY PIGIASEGNI TELPGCEFFP DTKARILGVK
801: SDYMPPILTT

Arabidopsis Description

PLDALPHA2Phospholipase D alpha 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.