Factsheet for PGSC0003DMT400073469

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068090.2.1	Tomato	plastid	97.53	97.53
KRH47460	Soybean	cytosol	83.93	83.93
KRH44445	Soybean	cytosol	81.71	83.88
KRH23570	Soybean	endoplasmic reticulum	81.95	82.16
PGSC0003DMT400001650	Potato	cytosol, plastid	81.33	81.13
VIT_09s0002g06760.t01	Wine grape	cytosol	81.09	80.79
CDY20149	Canola	cytosol, nucleus, peroxisome	21.26	80.75
AT3G15730.1	Thale cress	cytosol	78.99	78.89
PGSC0003DMT400024828	Potato	cytosol	12.36	78.74
CDY21865	Canola	cytosol	78.99	78.69
AT1G52570.1	Thale cress	cytosol	78.74	78.64
Bra021132.1-P	Field mustard	cytosol	78.74	78.45
Bra040960.1-P	Field mustard	cytosol	78.74	78.45
CDY47540	Canola	cytosol	78.62	78.33
Bra027209.1-P	Field mustard	cytosol	78.12	78.02
CDX97705	Canola	cytosol	78.12	78.02
CDY30108	Canola	cytosol	78.0	77.9
CDY60551	Canola	cytosol	77.5	77.22
Bra030375.1-P	Field mustard	cytosol	77.38	77.09
PGSC0003DMT400024831	Potato	extracellular	76.76	76.95
CDY63527	Canola	cytosol	30.9	74.85
CDX87920	Canola	cytosol	30.66	72.3
CDY20148	Canola	cytosol, peroxisome, plastid	35.48	71.93
PGSC0003DMT400020297	Potato	cytosol	63.66	62.88
PGSC0003DMT400006661	Potato	cytosol	35.97	50.61
PGSC0003DMT400009253	Potato	cytosol	16.32	50.57
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	18.79	49.67
PGSC0003DMT400000378	Potato	cytosol	16.07	49.62
PGSC0003DMT400025590	Potato	cytosol	45.61	45.5
PGSC0003DMT400058531	Potato	plastid	45.61	43.46
PGSC0003DMT400011523	Potato	cytosol	44.75	42.29
PGSC0003DMT400009250	Potato	cytosol	25.09	36.71

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	EntrezGene:102595135	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.1
InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0046470	GO:GO:0070290
InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	UniProt:M1CS26	PFAM:PF00168	PFAM:PF00614
PFAM:PF12357	EnsemblPlantsGene:PGSC0003DMG400028539	PGSC:PGSC0003DMG400028539	EnsemblPlants:PGSC0003DMT400073469	PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase
InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF109
SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF56024	UniParc:UPI000294CF36	RefSeq:XP_006356207.1
RefSeq:XP_006356208.1	RefSeq:XP_006356209.1	SEG:seg	:	:	:

Description

Phospholipase PLDa1 [Source:PGSC_GENE;Acc:PGSC0003DMG400028539]

Coordinates

chr6:+:49763270..49768050

Molecular Weight (calculated)

92237.3 Da

IEP (calculated)

5.437

GRAVY (calculated)

-0.448

Length

809 amino acids

Sequence
(BLAST)

001: MAQIQLHGTL HVTIFEVDNL QGEEGGGHFF SKIKQHFEET VGVGKGTPKL YATIDLEKAR VGRTRMIENE PKNPRWYESF HIYCAHMASN VIFTIKDDNP
101: FGASLIGRAY VPVEELLEGE EIDKWVEILD KEMNPIAEGS KIHVKLQFFD VSRDPNWGRG IRSSRYPGVP YTFFSQRAGS RVSLYQDAHV PDNFIPKIPL
201: SGGKYYEPHR CWEDIFDAIT NAKHLIYITG WSVYTEITLV RDSRRQKPGG DITLGELLKK KASEGVKVLM LVWDDRTSVG LLKKDGLMAT HDQETEQFFQ
301: GTDVHCVLCP RNPDNGGSFV QDIQISTMFT HHQKIIVVDS ALPSGESEKR RILSFVGGID LCDGRYDTPF HSLFRTLDTA HHDDFHQPNF ADGSITKGGP
401: REPWHDIHSR LEGPIAWDVL FNFEQRWRKQ GGKDILVNFR ELDDIIIPPS PVMYPDDHET WNVQLFRSID GGAAFGFPDT PEDAAKAGLV SGKDNIIDRS
501: IQDAYIHAIR RAKKFIYIEN QYFLGSCADW QCDDIKVEDV GALHVIPKEL ALKIVSKIEA GERFTVYVVV PMWPEGIPES ASVQAILDWQ RRTMEMMYKY
601: IVQAMNAKGI EEDPRNYLTF FCIGNREVKK SGEYEPSESP EPDSNYMRAQ EARRFMIYVH SKMMIVDDEY IIVGSANINQ RSMDGARDSE IAMGAYQPYH
701: LVTSEPARGQ VHGFRMALWY EHLGMLDETF QHPESEECVR KVNQIADKYW DMYSSESLER DLPGHLLRYP IGVASEGDIT ELPGHEFFPD TKARVLGTKS
801: DYLPPNLTT

Best Arabidopsis Sequence Match ( AT3G15730.1 )
(BLAST)

001: MAQHLLHGTL HATIYEVDAL HGGGVRQGFL GKILANVEET IGVGKGETQL YATIDLQKAR VGRTRKIKNE PKNPKWYESF HIYCAHLASD IIFTVKDDNP
101: IGATLIGRAY IPVDQVINGE EVDQWVEILD NDRNPIQGGS KIHVKLQYFH VEEDRNWNMG IKSAKFPGVP YTFFSQRQGC KVSLYQDAHI PDNFVPRIPL
201: AGGKNYEPQR CWEDIFDAIS NAKHLIYITG WSVYAEIALV RDSRRPKPGG DVTIGELLKK KASEGVRVLL LVWDDRTSVD VLKKDGLMAT HDEETENFFR
301: GSDVHCILCP RNPDDGGSIV QSLQISTMFT HHQKIVVVDS EMPSRGGSEM RRIVSFVGGI DLCDGRYDTP FHSLFRTLDT VHHDDFHQPN FTGAAITKGG
401: PREPWHDIHS RLEGPIAWDV MYNFEQRWSK QGGKDILVKL RDLSDIIITP SPVMFQEDHD VWNVQLFRSI DGGAAAGFPE SPEAAAEAGL VSGKDNIIDR
501: SIQDAYIHAI RRAKDFIYVE NQYFLGSSFA WAADGITPED INALHLIPKE LSLKIVSKIE KGEKFRVYVV VPMWPEGLPE SGSVQAILDW QRRTMEMMYK
601: DVIQALRAQG LEEDPRNYLT FFCLGNREVK KDGEYEPAEK PDPDTDYMRA QEARRFMIYV HTKMMIVDDE YIIIGSANIN QRSMDGARDS EIAMGGYQPH
701: HLSHRQPARG QIHGFRMSLW YEHLGMLDET FLDPSSLECI EKVNRISDKY WDFYSSESLE HDLPGHLLRY PIGVASEGDI TELPGFEFFP DTKARILGTK
801: SDYLPPILTT

Arabidopsis Description

PLDALPHA1Phospholipase D alpha 1 [Source:UniProtKB/Swiss-Prot;Acc:Q38882]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.