Factsheet for PGSC0003DMT400009250

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g083340.2.1	Tomato	nucleus	98.37	62.82
HORVU5Hr1G084740.4	Barley	plastid	61.12	47.27
KRH28860	Soybean	mitochondrion	68.9	44.0
KRH76589	Soybean	extracellular	68.35	43.75
AT4G35790.1	Thale cress	cytosol	68.35	43.55
PGSC0003DMT400025590	Potato	cytosol	63.83	43.53
VIT_00s0264g00100.t01	Wine grape	cytosol	67.45	42.73
CDX72557	Canola	cytosol	66.37	42.43
CDY47037	Canola	cytosol	66.55	41.58
Bra017730.1-P	Field mustard	cytosol	62.57	41.24
TraesCS5D01G341800.2	Wheat	cytosol	61.66	41.18
CDY67335	Canola	cytosol	64.38	41.11
Os09t0543100-02	Rice	plasma membrane	63.29	40.98
KXG36094	Sorghum	cytosol	63.29	40.75
GSMUA_AchrUn_...	Banana	cytosol	62.93	40.56
CDY41630	Canola	cytosol	63.47	40.48
Bra010512.1-P	Field mustard	cytosol	58.23	39.9
Zm00001d006257_P009	Maize	cytosol	61.48	39.72
TraesCS5B01G336100.1	Wheat	cytosol	61.48	39.44
TraesCS5A01G337100.2	Wheat	cytosol	61.12	39.21
GSMUA_Achr1P07360_001	Banana	cytosol	51.36	38.8
GSMUA_Achr1P14920_001	Banana	plastid	54.79	38.16
Zm00001d022594_P002	Maize	cytosol	58.95	36.84
GSMUA_Achr11P...	Banana	cytosol	52.44	34.86
PGSC0003DMT400011523	Potato	cytosol	53.89	34.81
OQU84227	Sorghum	cytosol	50.45	30.36
Zm00001d015033_P001	Maize	extracellular, plastid, vacuole	50.09	29.75
PGSC0003DMT400058531	Potato	plastid	45.03	29.33
TraesCS6B01G096200.1	Wheat	cytosol	45.21	28.9
TraesCS6A01G071700.1	Wheat	cytosol, nucleus, plastid	45.03	28.65
HORVU6Hr1G012780.6	Barley	cytosol, nucleus, plastid	44.12	28.08
PGSC0003DMT400024831	Potato	extracellular	36.71	25.15
PGSC0003DMT400073469	Potato	cytosol	36.71	25.09
PGSC0003DMT400001650	Potato	cytosol, plastid	36.17	24.66
PGSC0003DMT400020297	Potato	cytosol	35.26	23.81
PGSC0003DMT400006661	Potato	cytosol	20.25	19.48
Os02t0120200-01	Rice	extracellular	31.83	19.34
CDY42882	Canola	nucleus	7.78	13.35
GSMUA_Achr9P21120_001	Banana	nucleus	1.99	4.37
PGSC0003DMT400009253	Potato	cytosol	0.36	0.77
Zm00001d006262_P001	Maize	cytoskeleton, cytosol, peroxisome	0.18	0.65
PGSC0003DMT400000378	Potato	cytosol	0.18	0.38
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	0.18	0.33
PGSC0003DMT400024828	Potato	cytosol	0.0	0.0

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:3.30.870.10	MapMan:50.3.1	InterPro:C2_dom	GO:GO:0003674
GO:GO:0003824	InterPro:IPR000008	InterPro:IPR001736	UniProt:M0ZVV5	PFAM:PF00168	PFAM:PF00614
EnsemblPlantsGene:PGSC0003DMG400003591	PGSC:PGSC0003DMG400003591	EnsemblPlants:PGSC0003DMT400009250	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_fam	PFscan:PS50004
PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF86	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF56024
UniParc:UPI000295DF8F	:	:	:	:	:

Description

DNA-directed RNA polymerase [Source:PGSC_GENE;Acc:PGSC0003DMG400003591]

Coordinates

chr2:-:38972811..38977054

Molecular Weight (calculated)

63046.2 Da

IEP (calculated)

8.078

GRAVY (calculated)

-0.444

Length

553 amino acids

Sequence
(BLAST)

001: MAENSSQENF ICLHGDLELH IIQARHLPNM DLTSERIRRC FTACDVCRKP QTESTADDGN GELPNVKSTD QKIHHRSIIT SDPYVTVCAP HTALARTRVL
101: PNSQNPVWDE HFRIPLAHPM DCLDFRVKDD DVFGAQVMGK VTIPAEKIAS GEVVSGWFPV IGASGKSPKP DTALRLWMKF VPYDTNPLYK RGIASDPQYL
201: GVRNAYFPLR KGSSVKLYQD AHVSDKFKLP EIQLENNTTF EHNKCWEDIC YAITEAHHLI YIVGWSVFHK VKLVREPTRP LPRGGDLTLG ELLKYKSQEG
301: VRVLLLVWDD KTSHDKFFIN TAGVMGTHDE ETRKFFKHSS VICVLSPRYA SSKLSLIKQQ VVGTMFTHHQ KCVLVDTQAP GNNRKVTAFL GGLDLCDGRY
401: DTPEHRLFRD LDTVFKDDVH QPTFPAGTKA PRQPWHDLHC RIDGPAVYDV LINFAQRWRK ATKWREFKFF KKTMSHWHDD AMLKIERISW ILSPALAVLK
501: DSTAIPEDDP KLHVYGEDHS ENWHVQIFRS IDSGSVQGFP KTIDVAHAQA RKP

Best Arabidopsis Sequence Match ( AT4G35790.2 )
(BLAST)

001: MAEKVSEDVM LLHGDLDLKI VKARRLPNMD MFSEHLRRLF TACNACARPT DTDDVDPRDK GEFGDKNIRS HRKVITSDPY VTVVVPQATL ARTRVLKNSQ
101: EPLWDEKFNI SIAHPFAYLE FQVKDDDVFG AQIIGTAKIP VRDIASGERI SGWFPVLGAS GKPPKAETAI FIDMKFTPFD QIHSYRCGIA GDPERRGVRR
201: TYFPVRKGSQ VRLYQDAHVM DGTLPAIGLD NGKVYEHGKC WEDICYAISE AHHMIYIVGW SIFHKIKLVR ETKVPRDKDM TLGELLKYKS QEGVRVLLLV
301: WDDKTSHDKF GIKTPGVMGT HDEETRKFFK HSSVICVLSP RYASSKLGLF KQQVVGTLFT HHQKCVLVDT QAVGNNRKVT AFIGGLDLCD GRYDTPEHRI
401: LHDLDTVFKD DFHNPTFPAG TKAPRQPWHD LHCRIDGPAA YDVLINFEQR WRKATRWKEF SLRLKGKTHW QDDALIRIGR ISWILSPVFK FLKDGTSIIP
501: EDDPCVWVSK EDDPENWHVQ IFRSIDSGSV KGFPKYEDEA EAQHLECAKR LVVDKSIQTA YIQTIRSAQH FIYIENQYFL GSSYAWPSYR DAGADNLIPM
601: ELALKIVSKI RAKERFAVYV VIPLWPEGDP KSGPVQEILY WQSQTMQMMY DVIAKELKAV QSDAHPLDYL NFYCLGKREQ LPDDMPATNG SVVSDSYNFQ
701: RFMIYVHAKG MIVDDEYVLM GSANINQRSM AGTKDTEIAM GAYQPNHTWA HKGRHPRGQV YGYRMSLWAE HLGKTGDEFV EPSDLECLKK VNTISEENWK
801: RFIDPKFSEL QGHLIKYPLQ VDVDGKVSPL PDYETFPDVG GKIIGAHSMA LPDTLTT

Arabidopsis Description

PLDDELTAPhospholipase D delta [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.