CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76589	Soybean	extracellular	96.07	96.3
VIT_00s0264g00100.t01	Wine grape	cytosol	72.75	72.16
Bra017730.1-P	Field mustard	cytosol	68.36	70.56
PGSC0003DMT400009253	Potato	cytosol	21.25	70.5
AT4G35790.1	Thale cress	cytosol	70.55	70.39
Solyc02g083340.2.1	Tomato	nucleus	69.98	69.98
CDX72557	Canola	cytosol	69.86	69.94
Zm00001d006262_P001	Maize	cytoskeleton, cytosol, peroxisome	12.36	69.48
Solyc02g061850.2.1	Tomato	cytosol	68.13	69.41
CDY47037	Canola	cytosol	70.55	69.04
PGSC0003DMT400009250	Potato	cytosol	44.0	68.9
KRH60977	Soybean	cytosol	67.21	68.71
GSMUA_Achr1P07360_001	Banana	cytosol	57.97	68.58
GSMUA_AchrUn_...	Banana	cytosol	67.55	68.18
KRH51648	Soybean	cytosol	66.28	67.77
Bra010512.1-P	Field mustard	cytosol	62.7	67.29
KRH76243	Soybean	cytosol	6.35	67.07
Os09t0543100-02	Rice	plasma membrane	65.7	66.63
KXG36094	Sorghum	cytosol	65.94	66.47
CDY67335	Canola	cytosol	66.4	66.4
CDY41630	Canola	cytosol	66.28	66.21
TraesCS5A01G337100.2	Wheat	cytosol	65.47	65.78
TraesCS5B01G336100.1	Wheat	cytosol	65.13	65.43
Zm00001d006257_P009	Maize	cytosol	64.67	65.42
GSMUA_Achr1P14920_001	Banana	plastid	59.93	65.37
TraesCS5D01G341800.2	Wheat	cytosol	62.01	64.86
HORVU5Hr1G084740.4	Barley	plastid	51.96	62.94
GSMUA_Achr9P21120_001	Banana	nucleus	18.01	61.9
Zm00001d022594_P002	Maize	cytosol	62.93	61.58
KRH37270	Soybean	cytosol	18.48	60.84
GSMUA_Achr11P...	Banana	cytosol	58.2	60.58
KRH59149	Soybean	cytosol	59.7	60.33
KRH43039	Soybean	cytosol	58.78	59.39
KRG89825	Soybean	cytoskeleton, cytosol, peroxisome	19.17	57.04
KRH77467	Soybean	nucleus	49.88	50.64
KRH77469	Soybean	nucleus	4.04	50.0
OQU84227	Sorghum	cytosol	51.5	48.53
Zm00001d015033_P001	Maize	extracellular, plastid, vacuole	51.5	47.91
TraesCS6B01G096200.1	Wheat	cytosol	47.58	47.63
KRH47460	Soybean	cytosol	44.46	47.59
KRG93706	Soybean	nucleus	15.94	47.42
KRH44445	Soybean	cytosol	42.96	47.21
KRH09736	Soybean	cytosol, endoplasmic reticulum, nucleus	38.68	47.12
TraesCS6A01G071700.1	Wheat	cytosol, nucleus, plastid	47.23	47.07
HORVU6Hr1G012780.6	Barley	cytosol, nucleus, plastid	46.19	46.03
KRH23570	Soybean	endoplasmic reticulum	42.84	45.97
KRH65182	Soybean	cytosol	39.49	45.06
KRH52443	Soybean	cytosol	41.92	43.95
KRH77470	Soybean	cytosol	6.93	43.8
KRH48290	Soybean	nucleus	52.66	43.55
KRH52444	Soybean	cytosol, plastid	40.88	43.12
KRH09735	Soybean	cytosol	21.94	40.95
KRH70487	Soybean	cytosol	51.73	40.51
KRH01625	Soybean	cytosol	51.27	40.47
KRH61774	Soybean	cytosol	16.05	39.83
KRH10002	Soybean	cytosol	34.53	39.39
KRH44164	Soybean	cytosol	34.53	38.53
KRH47139	Soybean	cytosol	34.06	38.36
KRH23329	Soybean	cytosol	8.2	26.79
Os02t0120200-01	Rice	extracellular	23.33	22.2
KRH16190	Soybean	cytosol	2.77	20.87
KRH05308	Soybean	endoplasmic reticulum	4.16	18.27
KRH12101	Soybean	plastid	22.98	17.72
KRH37058	Soybean	plastid	22.75	17.5
KRG92923	Soybean	cytosol, nucleus, peroxisome	22.17	17.14

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	EntrezGene:100814486	Gene3D:3.30.870.10	MapMan:5.7.2.4.3	EMBL:ACUP02006767
InterPro:C2_dom	EnsemblPlantsGene:GLYMA_11G081500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0046470	GO:GO:0070290
UniProt:I1LI58	InterPro:IPR000008	InterPro:IPR001736	EnsemblPlants:KRH28860	ProteinID:KRH28860	ProteinID:KRH28860.1
PFAM:PF00168	PFAM:PF00614	PFAM:PF12357	PFAM:PF13091	PIRSF:PIRSF036470	InterPro:PLD-like_dom
InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50004	PFscan:PS50035
PANTHER:PTHR18896	PANTHER:PTHR18896:SF86	MetaCyc:PWY-3561	MetaCyc:PWY-7039	SMART:SM00155	SMART:SM00239
SUPFAM:SSF49562	SUPFAM:SSF56024	UniParc:UPI000294B38C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:+:6113534..6121086

Molecular Weight (calculated)

98448.2 Da

IEP (calculated)

7.033

GRAVY (calculated)

-0.422

Length

866 amino acids

Sequence
(BLAST)

001: MADTGDDNGV TYLHGDLDLK IIEARHLPNM DIFSERLRRC VTACDTIKFH SDAPAAADGD GGSQRTRTHH HRRIITSDPY VTVSVPQATV ARTRVLKNAQ
101: NPVWKEQFHI PLAHPVVDLE FRVKDDDVFG AQSMGTVKVP ARRIATGAKI SEWFPVLLPS GKPPKPDTAL HVEMQFTPVS ENLLYQRGIA ADPEHNGVRH
201: TYFPVRKGSS VRLYQDAHCT ESGEGKIPEI KLENGNVYRH GKCWEDICYA ISEAHHMVYL VGWSIYHKVR LVREPTRPLP RGGDLTLGEL LKYKSEEGVR
301: VLLLVWDDKT SHDKVFLKTA GVMGTHDEET RKFFKHSSVM CVLSPRYASS KMSFLKQQVV GTVFTHHQKC VIVDTQAAGN NRKITAFIGG LDLCDGRYDT
401: PEHRLFRNLD DVFDGDFHNP TFPAGTRVPR QPWHDLHCRI DGPAAYDVLI NFEQRWRKAT KWKEFAILFK KTSQWHDDAL IRIERISWIL SPSGAATLKD
501: KSDYYTVPED DPLVWVSSED DPENWHVQIF RSIDSGSLKG FPKRVDIALS QNLICAKNLV IDKSIQTAYI QAIRSAQHFI YIENQYFIGS SYAWPAYKDA
601: GADNLIPMEL ALKIASKIRA KERFAVYIIL PMWPEGDPKT GAMQEILFWQ GQTMQMMYDV VARELKSMQL TDVHPQEYLN FYCLGNREHF NEDSSSTNGA
701: QVSTAYKYRR FMIYVHAKGM IVDDEYVIIG SANINQRSMA GTKDTEIAMG AYQPHYTWSA KKRHPHGQIY GYRMSLWGEH LGMLDETFEE PGRLECVEKV
801: NEIAENNWKL FASEDFSLLQ GHLLKYPVQV DSDGKIRSLP DCENFPDAGG KILGAHSTTI PDILTT

Best Arabidopsis Sequence Match ( AT4G35790.2 )
(BLAST)

001: MAEKVSEDVM LLHGDLDLKI VKARRLPNMD MFSEHLRRLF TACNACARPT DTDDVDPRDK GEFGDKNIRS HRKVITSDPY VTVVVPQATL ARTRVLKNSQ
101: EPLWDEKFNI SIAHPFAYLE FQVKDDDVFG AQIIGTAKIP VRDIASGERI SGWFPVLGAS GKPPKAETAI FIDMKFTPFD QIHSYRCGIA GDPERRGVRR
201: TYFPVRKGSQ VRLYQDAHVM DGTLPAIGLD NGKVYEHGKC WEDICYAISE AHHMIYIVGW SIFHKIKLVR ETKVPRDKDM TLGELLKYKS QEGVRVLLLV
301: WDDKTSHDKF GIKTPGVMGT HDEETRKFFK HSSVICVLSP RYASSKLGLF KQQVVGTLFT HHQKCVLVDT QAVGNNRKVT AFIGGLDLCD GRYDTPEHRI
401: LHDLDTVFKD DFHNPTFPAG TKAPRQPWHD LHCRIDGPAA YDVLINFEQR WRKATRWKEF SLRLKGKTHW QDDALIRIGR ISWILSPVFK FLKDGTSIIP
501: EDDPCVWVSK EDDPENWHVQ IFRSIDSGSV KGFPKYEDEA EAQHLECAKR LVVDKSIQTA YIQTIRSAQH FIYIENQYFL GSSYAWPSYR DAGADNLIPM
601: ELALKIVSKI RAKERFAVYV VIPLWPEGDP KSGPVQEILY WQSQTMQMMY DVIAKELKAV QSDAHPLDYL NFYCLGKREQ LPDDMPATNG SVVSDSYNFQ
701: RFMIYVHAKG MIVDDEYVLM GSANINQRSM AGTKDTEIAM GAYQPNHTWA HKGRHPRGQV YGYRMSLWAE HLGKTGDEFV EPSDLECLKK VNTISEENWK
801: RFIDPKFSEL QGHLIKYPLQ VDVDGKVSPL PDYETFPDVG GKIIGAHSMA LPDTLTT

Arabidopsis Description

PLDDELTAPhospholipase D delta [Source:UniProtKB/Swiss-Prot;Acc:Q9C5Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.