CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
vacuole 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98502
KRG98507
KRH46360
KRH46364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	KRG98502	AT4G26630.1	25387881
AT4G11850.1	KRG98507	AT4G26630.1	25387881
AT4G11850.1	KRH46360	AT4G26630.1	25387881
AT4G11850.1	KRH46364	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77469	Soybean	nucleus	7.5	91.43
KRG93706	Soybean	nucleus	28.02	82.13
KRH77470	Soybean	cytosol	12.43	77.37
VIT_02s0025g04620.t01	Wine grape	cytosol	71.63	71.88
Solyc08g080130.2.1	Tomato	nucleus	70.34	70.92
PGSC0003DMT400058531	Potato	plastid	70.34	70.67
CDY41006	Canola	mitochondrion	12.78	69.87
KRG89825	Soybean	cytoskeleton, cytosol, peroxisome	23.45	68.73
CDY13283	Canola	mitochondrion	28.37	68.56
Bra000752.1-P	Field mustard	cytosol, nucleus, peroxisome	41.97	68.06
TraesCS1B01G195200.1	Wheat	cytosol	64.6	68.02
TraesCS1D01G189300.1	Wheat	cytosol	64.48	67.9
CDX86742	Canola	cytosol	67.17	67.65
Bra014871.1-P	Field mustard	cytosol	67.06	67.53
Bra022740.1-P	Field mustard	cytosol, extracellular	9.96	67.46
CDY28756	Canola	cytosol, extracellular	9.96	67.46
AT4G11850.1	Thale cress	cytosol	67.06	66.67
CDX90807	Canola	cytosol	62.25	65.8
GSMUA_Achr8P12030_001	Banana	plastid	61.9	65.67
CDY64184	Canola	mitochondrion	62.13	65.03
AT4G11830.2	Thale cress	cytosol	64.95	64.72
AT4G11840.1	Thale cress	cytosol	65.53	64.55
CDY13284	Canola	cytosol	34.58	64.27
Os03t0119100-01	Rice	plasma membrane	62.6	63.95
TraesCS1A01G365100.2	Wheat	mitochondrion	61.9	63.77
KXG40331	Sorghum	cytosol	61.66	63.68
TraesCS1B01G382600.1	Wheat	mitochondrion	61.78	63.65
TraesCS1D01G370600.1	Wheat	cytosol	61.31	63.16
HORVU1Hr1G079150.1	Barley	cytosol	60.84	62.68
HORVU4Hr1G085550.2	Barley	cytosol	60.73	62.33
CDX90808	Canola	cytosol	57.91	62.22
Bra000753.1-P	Field mustard	cytosol	57.91	62.22
Zm00001d027386_P002	Maize	cytosol	60.73	62.11
GSMUA_Achr4P24890_001	Banana	cytosol, plastid	64.24	61.92
TraesCS4D01G346700.1	Wheat	cytosol	59.91	61.49
TraesCS5A01G520900.1	Wheat	cytosol	59.91	61.49
TraesCS4B01G352300.1	Wheat	cytosol	59.67	59.39
CDY46254	Canola	cytosol	6.68	58.76
Zm00001d015818_P002	Maize	cytosol, nucleus, peroxisome	18.99	58.48
KRH65182	Soybean	cytosol	51.23	57.58
Zm00001d050470_P001	Maize	mitochondrion	26.61	57.04
KRH48290	Soybean	nucleus	68.82	56.06
GSMUA_Achr5P20150_001	Banana	cytosol	65.06	55.67
KRH01625	Soybean	cytosol	70.22	54.6
KRH70487	Soybean	cytosol	69.87	53.89
EER92041	Sorghum	cytosol, nucleus, peroxisome	64.95	52.61
Zm00001d029684_P001	Maize	peroxisome	64.48	52.48
KRH60977	Soybean	cytosol	51.82	52.18
Zm00001d015256_P001	Maize	cytosol	25.32	52.17
KRH51648	Soybean	cytosol	51.7	52.07
Os10t0524400-01	Rice	plasma membrane	63.54	51.82
TraesCS1A01G187400.1	Wheat	peroxisome	65.53	50.5
KRH76589	Soybean	extracellular	51.11	50.46
KRH59149	Soybean	cytosol	50.64	50.41
HORVU1Hr1G048970.1	Barley	cytosol, nucleus, peroxisome	64.95	49.95
KRH43039	Soybean	cytosol	50.18	49.94
KRH28860	Soybean	mitochondrion	50.64	49.88
KRH37270	Soybean	cytosol	15.01	48.67
KRH47460	Soybean	cytosol	43.02	45.36
KRH44445	Soybean	cytosol	41.74	45.18
KRH23570	Soybean	endoplasmic reticulum	42.32	44.73
KRH09736	Soybean	cytosol, endoplasmic reticulum, nucleus	37.28	44.73
KRH52443	Soybean	cytosol	42.44	43.83
KRH52444	Soybean	cytosol, plastid	40.68	42.27
KRH61774	Soybean	cytosol	17.23	42.12
KRH47139	Soybean	cytosol	36.23	40.18
KRH10002	Soybean	cytosol	35.64	40.05
KRH44164	Soybean	cytosol	36.11	39.69
KRH09735	Soybean	cytosol	20.75	38.15
KRH76243	Soybean	cytosol	3.63	37.8
KRH23329	Soybean	cytosol	7.62	24.53
KRH16190	Soybean	cytosol	2.58	19.13
KRH12101	Soybean	plastid	24.03	18.25
KRH37058	Soybean	plastid	24.03	18.21
KRH05308	Soybean	endoplasmic reticulum	3.87	16.75
KRG92923	Soybean	cytosol, nucleus, peroxisome	21.81	16.61

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	EntrezGene:100786241	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.2
EMBL:ACUP02000673	InterPro:C2_dom	InterPro:C2_domain_sf	EnsemblPlantsGene:GLYMA_01G215100	GO:GO:0003674	GO:GO:0003824
GO:GO:0004630	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787
GO:GO:0046470	GO:GO:0070290	UniProt:I1JA23	InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892
EnsemblPlants:KRH77467	ProteinID:KRH77467	ProteinID:KRH77467.1	ProteinID:KRH77468.1	PFAM:PF00168	PFAM:PF00614
PFAM:PF12357	PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln
PFscan:PS50004	PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF84	MetaCyc:PWY-3561	MetaCyc:PWY-7039
SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF56024	UniParc:UPI00023374FD	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:54579699..54585534

Molecular Weight (calculated)

96102.8 Da

IEP (calculated)

7.814

GRAVY (calculated)

-0.381

Length

853 amino acids

Sequence
(BLAST)

001: MAHLVYGETP SFGASHHGQA QQIVPFQTTS SSLRILLLHG NLEIWVNEAR NLPNMDMFHK KTGEMVSMLS RKLGGKIEGH MSKAGTSDPY VTVSVAGAVI
101: ARTFVIRNSE NPVWTQHFNV PVAHLASEVH FVVKDSDIVG SQIIGAVGIP VEHLCSGTRV EGFFPILGAN GKPCKGGSVL SLSIQYTPVE KVPLYSHGVG
201: AGPDYEGVPG TYFPLRKGGK VTLYQDAHVE EGCLPSLKVD GYVNYKHGSC WHDIFDAISE ARRLVYIVGW SVYYNVSLIR DSANGKSYTL GDLLKAKSQE
301: GVRVLLLVWD DPTSKSMLGF KTVGLMNTHD EDTRQFFKNS SVRVLLCPRA GGKGHSWVKT QEAGTIYTHH QKTVIVDADA GQNKRKIKAF IGGLDLCVGR
401: YDTPNHSIFR TLQTTHKDDY HNPNFEGPVT GCPRQPWHDL HSQVDGPAAY DILTNFEERW LRALKMHRFQ KMKSSHDDSL LKIDRIPDIV GIDEVPCQNE
501: NNRETWHAQV FRSIDSNSVK GFPKEPQDAI RRNLVCGKNV LIDMSIHSAY VKAIRAAQKF IYIENQYFLG SSYNWDSYKD LGANNLIPME IALKIANKIK
601: QHERFSVYIV IPMWPEGVPT STATQRILFW QFKTMQMMYE TIYKALQEAG LDNKYEPQDY LNFFCLGNRE IPDNENVLND VKTTGENKPQ ALTKKNRRFM
701: IYVHSKGMIV DDEYVLLGSA NINQRSMEGT RDTEIAMGAY QPNHTWAKKQ SKPHGQVHGY RMSLWSEHIG AVEECFEEPE SLECVRRIRS LSEFNWRQYA
801: AEEVTEMKSH LLKYPLEVDS KGKVKPLFGC EAFPDVGGNI SGTFTLLKEN LTI

Best Arabidopsis Sequence Match ( AT2G42010.1 )
(BLAST)

0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI

Arabidopsis Description

PLDBETA1phospholipase D beta 1 [Source:TAIR;Acc:AT2G42010]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.