Factsheet for TraesCS1A01G365100.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

peroxisome 1
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT4G11850.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT4G11850.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G370600.1	Wheat	cytosol	96.62	96.62
TraesCS1B01G382600.1	Wheat	mitochondrion	95.65	95.65
HORVU1Hr1G079150.1	Barley	cytosol	93.0	93.0
PGSC0003DMT400000378	Potato	cytosol	22.22	70.23
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	25.72	69.61
TraesCS5A01G520900.1	Wheat	cytosol	69.69	69.43
GSMUA_Achr8P12030_001	Banana	plastid	66.43	68.41
CDY41006	Canola	mitochondrion	12.56	66.67
CDY13283	Canola	mitochondrion	28.26	66.29
Bra000752.1-P	Field mustard	cytosol, nucleus, peroxisome	42.03	66.16
KRG89825	Soybean	cytoskeleton, cytosol, peroxisome	23.07	65.64
Solyc08g080130.2.1	Tomato	nucleus	65.94	64.54
PGSC0003DMT400058531	Potato	plastid	66.06	64.43
VIT_02s0025g04620.t01	Wine grape	cytosol	66.06	64.35
Bra022740.1-P	Field mustard	cytosol, extracellular	9.78	64.29
CDY28756	Canola	cytosol, extracellular	9.78	64.29
EER92041	Sorghum	cytosol, nucleus, peroxisome	81.28	63.91
Os10t0524400-01	Rice	plasma membrane	79.59	63.0
CDX86742	Canola	cytosol	64.13	62.69
Bra014871.1-P	Field mustard	cytosol	64.01	62.57
AT4G11850.1	Thale cress	cytosol	64.49	62.24
TraesCS1A01G187400.1	Wheat	peroxisome	82.85	61.97
CDX90807	Canola	cytosol	60.39	61.96
KRH77467	Soybean	nucleus	63.77	61.9
CDY64184	Canola	mitochondrion	60.75	61.72
AT4G11830.2	Thale cress	cytosol	63.41	61.33
Solyc01g091910.2.1	Tomato	plastid	65.94	61.01
AT4G11840.1	Thale cress	cytosol	63.28	60.51
AT4G00240.1	Thale cress	cytosol	67.51	60.3
KRG93706	Soybean	nucleus	20.89	59.45
KRH77470	Soybean	cytosol	9.78	59.12
CDX90808	Canola	cytosol	56.64	59.07
Bra000753.1-P	Field mustard	cytosol	56.52	58.94
CDX90066	Canola	cytosol	68.84	58.52
GSMUA_Achr5P20150_001	Banana	cytosol	70.05	58.17
Zm00001d015256_P001	Maize	cytosol	28.99	57.97
KRH77469	Soybean	nucleus	4.83	57.14
CDY13284	Canola	cytosol	31.52	56.86
CDY52961	Canola	cytosol, nucleus, peroxisome	67.27	56.15
CDY46254	Canola	cytosol	6.52	55.67
CDY54926	Canola	cytosol, nucleus, peroxisome	67.27	55.53
KRH65182	Soybean	cytosol	49.64	54.15
CDY15144	Canola	peroxisome	69.2	53.85
Bra033225.1-P	Field mustard	cytosol	69.2	53.55
AT2G42010.2	Thale cress	peroxisome	69.2	51.71
KRH48290	Soybean	nucleus	65.1	51.48
VIT_15s0048g01160.t01	Wine grape	cytosol	66.67	50.78
TraesCS5A01G337100.2	Wheat	cytosol	52.78	50.7
TraesCS5A01G202000.1	Wheat	cytosol	50.85	50.18
KRH01625	Soybean	cytosol	66.43	50.14
KRH70487	Soybean	cytosol	66.79	50.0
Solyc10g017650.1.1	Tomato	cytosol	65.34	48.35
TraesCS4A01G347800.3	Wheat	cytosol, nucleus, peroxisome	36.96	47.3
TraesCS7A01G376500.3	Wheat	cytosol	44.69	45.12
TraesCS4A01G338500.1	Wheat	cytosol	6.76	43.75
TraesCS3A01G130000.1	Wheat	plastid	42.87	43.72
TraesCS1A01G115300.1	Wheat	cytosol	43.0	43.68
TraesCS6A01G071700.1	Wheat	cytosol, nucleus, plastid	45.53	43.38
TraesCS1A01G373100.2	Wheat	plastid	41.55	41.3
TraesCS7A01G545000.1	Wheat	cytosol	40.22	40.31
TraesCS5A01G223500.1	Wheat	cytosol	39.86	39.95
TraesCS7A01G544900.1	Wheat	cytosol	36.96	39.53
Bra008515.1-P	Field mustard	mitochondrion, plastid	67.15	38.34
TraesCS1A01G228300.1	Wheat	cytosol, nucleus, peroxisome	22.71	16.89

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.2	InterPro:C2_dom
InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016787	GO:GO:0046470	InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	PFAM:PF00168
PFAM:PF00614	PFAM:PF12357	PFAM:PF13091	PIRSF:PIRSF036470	InterPro:PLD-like_dom	InterPro:PLipase_D/transphosphatidylase
InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50004	PFscan:PS50035	PANTHER:PTHR18896
PANTHER:PTHR18896:SF61	SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF56024	EnsemblPlantsGene:TraesCS1A01G365100
EnsemblPlants:TraesCS1A01G365100.2	TIGR:cd04015	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1A:+:544465497..544475087

Molecular Weight (calculated)

92930.0 Da

IEP (calculated)

8.212

GRAVY (calculated)

-0.344

Length

828 amino acids

Sequence
(BLAST)

001: MEGSSRRAGS ARASLKVVLL HGSLDIWVRD AGGLPDKGVL YKKFGDLLGL HIVSSVAGKV PSASMTSDPY VTVQVSAATV ARTYVVPNSE DPVWAQNFVV
101: PVGHEAAEVH FAVKDNDVFG GQVIGAAAIP AEQLLCGDRI EGAYPLLDPN GKPCAPGAVL RLSIQYTPVA RLTAYHRGVA AGPDSHGVPN AYFPLRRGMR
201: VTLYQDAHVP EGCLPDIRLD NGLQYQHGQC WRDMYTAIIQ ARRLIYIAGW SVFHTIRLVR DGAKEVPSLG DLLKMKSQEG VRVLLLVWDD PTSETIIGRT
301: DGYMRTRDEE TRRFFKHSPV QILLCPRSAG KRHSWVKQKE TGTTYSHHQK TVIVDADAGG NRRKIIAFIG GLDLCGGRYD IPGHPLFRTL QTLHKEDYHN
401: PNFAVVDARG PREPWHDLHS KIDGPAAYDV LKNFEERWLK ASKRHGIKKF GKSYDEALLR IERIPDIINI SDTLYFSDND PEAWHVQVFR SIDSNSAKGF
501: PKDPREATRK NLVCGKNVLI DMSIHTAYVN AIRAAQHFIY IENQYFIGSS FDWDSNKDIG ANNLVPIEIA LKIATKIKVN QRFSAYIVLP MWPEGKPTGH
601: IAQRILYWQN KTMQMMYKII YRALKEAGLD DVYEPQDYLV FFCLGNREAS DSPSASSTAD SPQEQARKNR RFMLYVHSKG MIVDDEYVII GSANINQRSM
701: EGTRDTEIAM GAYQPQYTWA NKISAPRGQV YGYRMSLWAE HIGAIEEDFN HPESIECMRR VRHLGEHNWD QFVANEVTEM RGHLLKYPVS VDREGKVKPL
801: PGCTTFPDMG GNICGSVPFT LIHDNLTI

Best Arabidopsis Sequence Match ( AT2G42010.1 )
(BLAST)

0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI

Arabidopsis Description

PLDBETA1phospholipase D beta 1 [Source:TAIR;Acc:AT2G42010]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.