Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G11850.1 | Thale cress | cytosol | 92.61 | 93.47 |
| CDY13283 | Canola | mitochondrion | 37.88 | 92.92 |
| AT4G11830.2 | Thale cress | cytosol | 91.57 | 92.64 |
| Bra014871.1-P | Field mustard | cytosol | 88.68 | 90.67 |
| CDX86742 | Canola | cytosol | 88.68 | 90.67 |
| CDY41006 | Canola | mitochondrion | 16.28 | 90.38 |
| CDY13284 | Canola | cytosol | 46.65 | 88.02 |
| CDY28756 | Canola | cytosol, extracellular | 12.24 | 84.13 |
| Bra022740.1-P | Field mustard | cytosol, extracellular | 12.24 | 84.13 |
| CDY46254 | Canola | cytosol | 8.55 | 76.29 |
| Solyc08g080130.2.1 | Tomato | nucleus | 66.97 | 68.56 |
| PGSC0003DMT400058531 | Potato | plastid | 67.09 | 68.43 |
| VIT_02s0025g04620.t01 | Wine grape | cytosol | 66.74 | 68.0 |
| TraesCS1D01G189300.1 | Wheat | cytosol | 63.05 | 67.41 |
| TraesCS1B01G195200.1 | Wheat | cytosol | 62.93 | 67.28 |
| KRH77467 | Soybean | nucleus | 64.55 | 65.53 |
| GSMUA_Achr8P12030_001 | Banana | plastid | 60.51 | 65.17 |
| TraesCS1A01G365100.2 | Wheat | mitochondrion | 60.51 | 63.28 |
| KXG40331 | Sorghum | cytosol | 60.16 | 63.08 |
| TraesCS1D01G370600.1 | Wheat | cytosol | 60.05 | 62.8 |
| TraesCS1B01G382600.1 | Wheat | mitochondrion | 59.93 | 62.68 |
| Zm00001d027386_P002 | Maize | cytosol | 60.28 | 62.59 |
| Os03t0119100-01 | Rice | plasma membrane | 60.16 | 62.4 |
| HORVU4Hr1G085550.2 | Barley | cytosol | 59.7 | 62.21 |
| TraesCS4D01G346700.1 | Wheat | cytosol | 59.47 | 61.97 |
| HORVU1Hr1G079150.1 | Barley | cytosol | 59.01 | 61.72 |
| TraesCS5A01G520900.1 | Wheat | cytosol | 59.12 | 61.61 |
| KRG93706 | Soybean | nucleus | 20.55 | 61.17 |
| AT4G00240.1 | Thale cress | cytosol | 65.13 | 60.84 |
| Zm00001d050470_P001 | Maize | mitochondrion | 27.48 | 59.8 |
| TraesCS4B01G352300.1 | Wheat | cytosol | 58.89 | 59.51 |
| GSMUA_Achr4P24890_001 | Banana | cytosol, plastid | 60.62 | 59.32 |
| KRH77469 | Soybean | nucleus | 4.73 | 58.57 |
| KRH77470 | Soybean | cytosol | 9.12 | 57.66 |
| GSMUA_Achr5P20150_001 | Banana | cytosol | 64.2 | 55.77 |
| Zm00001d015818_P002 | Maize | cytosol, nucleus, peroxisome | 17.67 | 55.23 |
| AT2G42010.2 | Thale cress | peroxisome | 67.9 | 53.07 |
| Zm00001d015256_P001 | Maize | cytosol | 25.06 | 52.42 |
| EER92041 | Sorghum | cytosol, nucleus, peroxisome | 62.93 | 51.76 |
| Zm00001d029684_P001 | Maize | peroxisome | 62.59 | 51.72 |
| Os10t0524400-01 | Rice | plasma membrane | 62.01 | 51.34 |
| AT4G35790.1 | Thale cress | cytosol | 50.12 | 50.0 |
| TraesCS1A01G187400.1 | Wheat | peroxisome | 63.63 | 49.77 |
| HORVU1Hr1G048970.1 | Barley | cytosol, nucleus, peroxisome | 63.28 | 49.41 |
| AT3G15730.1 | Thale cress | cytosol | 42.38 | 45.31 |
| AT1G52570.1 | Thale cress | cytosol | 42.26 | 45.19 |
| AT5G25370.2 | Thale cress | cytosol | 41.11 | 43.41 |
| AT1G55180.1 | Thale cress | cytosol | 34.41 | 39.11 |
| AT3G05630.1 | Thale cress | cytosol | 21.25 | 17.59 |
| AT3G16785.4 | Thale cress | plastid | 21.13 | 16.07 |
Protein Annotations
| KEGG:00564+3.1.4.4 | KEGG:00565+3.1.4.4 | Gene3D:2.60.40.150 | Gene3D:3.30.870.10 | MapMan:5.7.2.4.2 | EntrezGene:826790 |
| ProteinID:AEE83056.1 | ArrayExpress:AT4G11840 | EnsemblPlantsGene:AT4G11840 | RefSeq:AT4G11840 | TAIR:AT4G11840 | RefSeq:AT4G11840-TAIR-G |
| EnsemblPlants:AT4G11840.1 | TAIR:AT4G11840.1 | InterPro:C2_dom | InterPro:C2_domain_sf | ProteinID:CAB44322.1 | ProteinID:CAB78227.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004630 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016042 | GO:GO:0016787 | GO:GO:0046470 |
| GO:GO:0070290 | InterPro:IPR000008 | InterPro:IPR001736 | InterPro:IPR035892 | RefSeq:NP_192921.1 | PFAM:PF00168 |
| PFAM:PF00614 | PFAM:PF12357 | PIRSF:PIRSF036470 | Symbol:PLDGAMMA3 | InterPro:PLipase_D/transphosphatidylase | InterPro:PLipase_D_C |
| InterPro:PLipase_D_fam | InterPro:PLipase_D_pln | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50004 | PFscan:PS50035 | PANTHER:PTHR18896 | PANTHER:PTHR18896:SF65 |
| UniProt:Q9T052 | SMART:SM00155 | SMART:SM00239 | SUPFAM:SSF49562 | SUPFAM:SSF56024 | UniParc:UPI0000048938 |
| SEG:seg | : | : | : | : | : |
Description
PLDGAMMA3Phospholipase D gamma 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9T052]
Coordinates
chr4:-:7121965..7126317
Molecular Weight (calculated)
97487.7 Da
IEP (calculated)
8.313
GRAVY (calculated)
-0.368
Length
866 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYHPVYNET MSMGGGSSNE FGQWLDKQLV PFDTSSGSLR VELLHGNLDI WVKEAKHLPN MDGFHNTLVG GMFFGLGRRN HKVDGENSSK ITSDPYVTVS
101: ISGAVIGRTF VISNSENPVW MQHFDVPVAH SAAKVHFVVK DSDIIGSQII GAVEIPTEQL CSGNRIEGLF PILNSRGKPC KQGAVLSLSI QYIPMERMRL
201: YQKGVGFGVE CVGVPGTYFP LRKGGRVTLY QDAHVDDGTL PSVHLDGGIQ YRHGKCWEDM ADAIRRARRL IYITGWSVFH PVRLVRRNND PTQGTLGELL
301: KVKSQEGVRV LVLVWDDPTS RSLLGFSTKG LMNTSDEETR RFFKHSSVQV LLCPRYGGKG HSFIKKSEVE TIYTHHQKTM IVDAEAAQNR RKIVAFVGGL
401: DLCNGRFDTP KHPLFRTLKT IHKDDFHNPN FVTTADDGPR EPWHDLHSKI DGPAAYDVLA NFEERWMKAS KPRGIGRLRT SSDDSLLRLD RIPDIMGLSE
501: ASSANDNDPE SWHVQVFRSI DSSSVKGFPK DPKEATGRNL LCGKNILIDM SIHAAYVKAI RSAQHFIYIE NQYFLGSSFN WDSNKNLGAN NLIPMEIALK
601: IANKIRAREK FAAYIVIPMW PEGAPTSNPI QRILYWQHKT MQMMYQTIYK ALVEVGLDGQ LEPQDFLNFF CLGTREVGTR EVPDGTVSVY NSPRKPPQLN
701: AAQVQALKSR RFMIYVHSKG MVVDDEFVLI GSANINQRSL EGTRDTEIAM GGYQPHHSWA KKGSRPRGQI FGYRMSLWAE HLGFLEQEFE EPENMECVRR
801: VRQLSELNWR QYAAEEVTEM PGHLLKYPVQ VDRTGKVSSL PGYETFPDLG GKIIGSFLVV EENLTI
101: ISGAVIGRTF VISNSENPVW MQHFDVPVAH SAAKVHFVVK DSDIIGSQII GAVEIPTEQL CSGNRIEGLF PILNSRGKPC KQGAVLSLSI QYIPMERMRL
201: YQKGVGFGVE CVGVPGTYFP LRKGGRVTLY QDAHVDDGTL PSVHLDGGIQ YRHGKCWEDM ADAIRRARRL IYITGWSVFH PVRLVRRNND PTQGTLGELL
301: KVKSQEGVRV LVLVWDDPTS RSLLGFSTKG LMNTSDEETR RFFKHSSVQV LLCPRYGGKG HSFIKKSEVE TIYTHHQKTM IVDAEAAQNR RKIVAFVGGL
401: DLCNGRFDTP KHPLFRTLKT IHKDDFHNPN FVTTADDGPR EPWHDLHSKI DGPAAYDVLA NFEERWMKAS KPRGIGRLRT SSDDSLLRLD RIPDIMGLSE
501: ASSANDNDPE SWHVQVFRSI DSSSVKGFPK DPKEATGRNL LCGKNILIDM SIHAAYVKAI RSAQHFIYIE NQYFLGSSFN WDSNKNLGAN NLIPMEIALK
601: IANKIRAREK FAAYIVIPMW PEGAPTSNPI QRILYWQHKT MQMMYQTIYK ALVEVGLDGQ LEPQDFLNFF CLGTREVGTR EVPDGTVSVY NSPRKPPQLN
701: AAQVQALKSR RFMIYVHSKG MVVDDEFVLI GSANINQRSL EGTRDTEIAM GGYQPHHSWA KKGSRPRGQI FGYRMSLWAE HLGFLEQEFE EPENMECVRR
801: VRQLSELNWR QYAAEEVTEM PGHLLKYPVQ VDRTGKVSSL PGYETFPDLG GKIIGSFLVV EENLTI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.