Factsheet for TraesCS1B01G382600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

peroxisome 1
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT4G11850.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT4G11850.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G365100.2	Wheat	mitochondrion	95.65	95.65
TraesCS1D01G370600.1	Wheat	cytosol	95.65	95.65
HORVU1Hr1G079150.1	Barley	cytosol	91.67	91.67
TraesCS1B01G195200.1	Wheat	cytosol	81.88	83.7
PGSC0003DMT400000378	Potato	cytosol	22.34	70.61
PGSC0003DMT400026602	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	25.36	68.63
GSMUA_Achr8P12030_001	Banana	plastid	66.43	68.41
CDY41006	Canola	mitochondrion	12.68	67.31
TraesCS4B01G352300.1	Wheat	cytosol	69.08	66.74
KRG89825	Soybean	cytoskeleton, cytosol, peroxisome	23.43	66.67
Bra000752.1-P	Field mustard	cytosol, nucleus, peroxisome	41.79	65.78
CDY13283	Canola	mitochondrion	28.02	65.72
VIT_02s0025g04620.t01	Wine grape	cytosol	66.55	64.82
Solyc08g080130.2.1	Tomato	nucleus	65.7	64.3
Bra022740.1-P	Field mustard	cytosol, extracellular	9.78	64.29
CDY28756	Canola	cytosol, extracellular	9.78	64.29
PGSC0003DMT400058531	Potato	plastid	65.7	64.08
EER92041	Sorghum	cytosol, nucleus, peroxisome	80.43	63.25
Os10t0524400-01	Rice	plasma membrane	79.23	62.72
CDX86742	Canola	cytosol	63.77	62.34
Bra014871.1-P	Field mustard	cytosol	63.65	62.22
KRH77467	Soybean	nucleus	63.65	61.78
AT4G11850.1	Thale cress	cytosol	63.89	61.66
Solyc01g091910.2.1	Tomato	plastid	66.3	61.34
CDX90807	Canola	cytosol	59.78	61.34
CDY64184	Canola	mitochondrion	60.14	61.1
AT4G11830.2	Thale cress	cytosol	62.56	60.51
AT4G00240.1	Thale cress	cytosol	67.39	60.19
AT4G11840.1	Thale cress	cytosol	62.68	59.93
KRH77470	Soybean	cytosol	9.9	59.85
KRG93706	Soybean	nucleus	21.01	59.79
CDX90808	Canola	cytosol	56.52	58.94
Bra000753.1-P	Field mustard	cytosol	56.4	58.82
CDX90066	Canola	cytosol	69.08	58.73
KRH77469	Soybean	nucleus	4.95	58.57
Zm00001d015256_P001	Maize	cytosol	29.23	58.45
GSMUA_Achr5P20150_001	Banana	cytosol	70.29	58.38
CDY13284	Canola	cytosol	31.28	56.43
CDY52961	Canola	cytosol, nucleus, peroxisome	67.15	56.05
CDY54926	Canola	cytosol, nucleus, peroxisome	67.15	55.43
KRH65182	Soybean	cytosol	50.24	54.81
CDY15144	Canola	peroxisome	69.44	54.04
Bra033225.1-P	Field mustard	cytosol	69.44	53.74
CDY46254	Canola	cytosol	6.28	53.61
AT2G42010.2	Thale cress	peroxisome	69.44	51.9
KRH48290	Soybean	nucleus	65.58	51.86
VIT_15s0048g01160.t01	Wine grape	cytosol	66.91	50.97
TraesCS5B01G336100.1	Wheat	cytosol	52.78	50.7
TraesCS5B01G525600.1	Wheat	cytosol	51.69	50.47
KRH01625	Soybean	cytosol	66.3	50.05
KRH70487	Soybean	cytosol	66.43	49.73
TraesCS5B01G200600.1	Wheat	cytosol	50.72	49.7
Solyc10g017650.1.1	Tomato	cytosol	65.34	48.35
TraesCS4B01G377600.1	Wheat	cytosol	43.6	43.97
TraesCS6B01G096200.1	Wheat	cytosol	45.77	43.81
TraesCS3B01G149100.1	Wheat	unclear	42.63	43.47
TraesCS7B01G277900.1	Wheat	plastid	44.32	43.13
TraesCS1B01G135200.1	Wheat	cytosol	42.03	42.54
TraesCS1B01G393300.3	Wheat	cytosol	42.03	41.78
TraesCS1B01G050400.1	Wheat	cytosol	40.46	40.46
TraesCS5B01G222500.1	Wheat	cytosol	40.22	40.31
TraesCS7B01G468200.1	Wheat	cytosol	39.86	39.95
TraesCS7B01G468300.1	Wheat	cytosol	39.73	39.93
Bra008515.1-P	Field mustard	mitochondrion, plastid	67.15	38.34
TraesCS1B01G242500.1	Wheat	cytosol, nucleus, peroxisome	23.19	16.98

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.2	InterPro:C2_dom
InterPro:C2_domain_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004630	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016787	GO:GO:0046470	InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892
PFAM:PF00168	PFAM:PF00614	PFAM:PF12357	PFAM:PF13091	PIRSF:PIRSF036470	InterPro:PLD-like_dom
InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C	InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50004	PFscan:PS50035
PANTHER:PTHR18896	PANTHER:PTHR18896:SF61	SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF56024
EnsemblPlantsGene:TraesCS1B01G382600	EnsemblPlants:TraesCS1B01G382600.1	TIGR:cd04015	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:+:614789011..614794437

Molecular Weight (calculated)

92772.5 Da

IEP (calculated)

7.049

GRAVY (calculated)

-0.344

Length

828 amino acids

Sequence
(BLAST)

001: MEGSSRRPGS ARASLKVVLL HGSLDIWVRD AGGLPDMGVL YKKFGDLLGR RLVGSVADMV PSASMTSDPY VTVQVSAATV ARTYVVPNSE DPVWAQNFVV
101: PVGHEAAEVQ FAVKDSDVFG SQFIGAAAIP AEQLLCGDKI EGAYPLLDPN GKPCAPGAVL RLSIQYTPVA RLTAYHCGVT AGPDSHGVPN AYFPLRRGMK
201: VTLYQDAHVP EGCLPDIRLD NGLQYQHGQC WRDMYTAIIQ ARRLIYVAGW SVFHTIRLVR DGAEEVPSLG DLLKMKSQEG VRVLLLVWDD PTSDTIIGRT
301: DGYMRTRDEE TRRFFKHSPV QILLCPRSAG KRHSWVKQKE TGTTYSHHQK TVIVDADAGG NRRKIIAFIG GLDLCGGRYD LPGHPLFRTL QTLHKEDYHN
401: PNFAAVDARG PREPWHDLHS KIDGPAAYDV LKNFEERWLK ASKHHGIKKF GKSYDDALLS IERIPDIIDI NDTLYFSDND PEAWHVQVFR SIDSNSAKGF
501: PKDPREATRK NLVCGKNVLI DMSIHTAYVN AIRAAQHFIY IENQYFIGSS FDWDSNKDIG ANNLVPIEIA LKIATKIKVN ERFSAYIVLP MWPEGKPTGH
601: IAQRILYWQN KTMQMMYEII YRALKEAGLD DVYEPQDYLV FFCLGNREAS DSPSASSTAD SPQEQARENR RFMVYVHSKG MIVDDEYVII GSANINQRSM
701: EGTRDTEIAM GAYQPQYTWA NKISAPRGQV YGYRMSLWAE HIGAIEDDFN HPESIQCMRR VRHLGEHNWD QFAANEVTEM RGHLLKYPAS VNREGKVKPL
801: PGCATFPDMG GNICGSVPFT LIHDNLTI

Best Arabidopsis Sequence Match ( AT2G42010.1 )
(BLAST)

0001: MDNHGPRYPY PYGQYPYPYP YPAPYRPPSS EPYPPPPTNQ YSAPYYPYPP PPYATPPPYA SPPPPHQHTS GSHSGPLDYS HNPQPSSLAA APPEYHRHSF
0101: DYQPSPYPYQ PQGNFGAYGP PPPHYSYQEP AQYPPPETKP QEPLPPPQQT QGFQEYRRQD CLSTGGTGHD NVSNSGSSYP PVDELLGGLH ISTNQPGPSV
0201: PQLSSLPSNS WQSRPGDLYG YPNSSFPSNS HLPQLGRVDS SSSYYASTES PHSADMQMTL FGKGSLKVLL LHGNLDIWIY HAKNLPNMDM FHKTLGDMFG
0301: RLPGKIEGQL TSKITSDPYV SVSVAGAVIG RTYVMSNSEN PVWMQHFYVP VAHHAAEVHF VVKDSDVVGS QLIGLVTIPV EQIYSGAKIE GTYPILNSNG
0401: KPCKPGANLS LSIQYTPMDK LSVYHHGVGA GPDYQGVPGT YFPLRKGGTV RLYQDAHVPE GMLPGIRLDN GMSYEHGKCW HDMFDAIRQA RRLIYITGWS
0501: VWHKVKLIRD KLGPASECTL GELLRSKSQE GVRVLLLIWD DPTSRSILGY KTDGVMATHD EETRRFFKHS SVQVLLCPRN AGKRHSWVKQ REVGTIYTHH
0601: QKNVIVDADA GGNRRKIIAF VGGLDLCDGR YDTPQHPLFR TLQTIHKDDF HNPTFTGNLS GCPREPWHDL HSKIDGPAAY DVLTNFEERW LKAAKPSGIK
0701: KFKTSYDDAL LRIDRIPDIL GVSDTPTVSE NDPEAWHVQI FRSIDSNSVK GFPKDPKDAT CKNLVCGKNV LIDMSIHTAY VKAIRAAQHF IYIENQYFIG
0801: SSYNWNAHKD IGANNLIPME IALKIAEKIR ANERFAAYIV IPMWPEGVPT GAATQRILYW QHKTIQMMYE TIYKALVETG LEGAFSPQDY LNFFCLGNRE
0901: MVDGIDNSGT GSPSNANTPQ ALSRKSRRFM VYVHSKGMVV DDEYVVIGSA NINQRSMEGT RDTEIAMGAY QPQHTWARKH SGPRGQIYGY RMSLWAEHMA
1001: TLDDCFTQPE SIECVRKVRT MGERNWKQFA AEEVSDMRGH LLKYPVEVDR KGKVRPLPGS ETFPDVGGNI VGSFIAIQEN LTI

Arabidopsis Description

PLDBETA1phospholipase D beta 1 [Source:TAIR;Acc:AT2G42010]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.