Factsheet for Bra014871.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010432.1-P
Bra026415.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11850.1	Bra010432.1-P	AT4G26630.1	25387881
AT4G11850.1	Bra026415.1-P	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86742	Canola	cytosol	99.88	99.88
CDY13283	Canola	mitochondrion	40.97	98.3
CDY13284	Canola	cytosol	51.59	95.21
AT4G11850.1	Thale cress	cytosol	93.62	92.42
AT4G11840.1	Thale cress	cytosol	90.67	88.68
AT4G11830.2	Thale cress	cytosol	87.96	87.03
Bra022740.1-P	Field mustard	cytosol, extracellular	12.75	85.71
Bra000752.1-P	Field mustard	cytosol, nucleus, peroxisome	51.12	82.32
Bra000753.1-P	Field mustard	cytosol	72.85	77.71
VIT_02s0025g04620.t01	Wine grape	cytosol	69.42	69.18
TraesCS1D01G189300.1	Wheat	cytosol	66.12	69.14
TraesCS1B01G195200.1	Wheat	cytosol	65.76	68.77
Solyc08g080130.2.1	Tomato	nucleus	68.48	68.56
PGSC0003DMT400058531	Potato	plastid	68.48	68.32
KRH77467	Soybean	nucleus	67.53	67.06
GSMUA_Achr8P12030_001	Banana	plastid	62.57	65.92
KXG40331	Sorghum	cytosol	62.69	64.29
TraesCS1A01G365100.2	Wheat	mitochondrion	62.57	64.01
Zm00001d027386_P002	Maize	cytosol	62.69	63.67
TraesCS1B01G382600.1	Wheat	mitochondrion	62.22	63.65
Os03t0119100-01	Rice	plasma membrane	62.69	63.59
HORVU4Hr1G085550.2	Barley	cytosol	62.34	63.54
TraesCS1D01G370600.1	Wheat	cytosol	62.1	63.53
TraesCS4D01G346700.1	Wheat	cytosol	62.1	63.3
TraesCS5A01G520900.1	Wheat	cytosol	61.63	62.82
HORVU1Hr1G079150.1	Barley	cytosol	61.04	62.44
KRG93706	Soybean	nucleus	21.25	61.86
Zm00001d050470_P001	Maize	mitochondrion	28.93	61.56
TraesCS4B01G352300.1	Wheat	cytosol	61.51	60.79
GSMUA_Achr4P24890_001	Banana	cytosol, plastid	63.28	60.56
KRH77469	Soybean	nucleus	4.84	58.57
KRH77470	Soybean	cytosol	9.33	57.66
GSMUA_Achr5P20150_001	Banana	cytosol	65.64	55.77
Zm00001d015818_P002	Maize	cytosol, nucleus, peroxisome	17.95	54.87
Bra033225.1-P	Field mustard	cytosol	69.3	54.86
Zm00001d029684_P001	Maize	peroxisome	65.41	52.86
EER92041	Sorghum	cytosol, nucleus, peroxisome	65.41	52.61
Os10t0524400-01	Rice	plasma membrane	64.58	52.29
Zm00001d015256_P001	Maize	cytosol	25.5	52.17
Bra010512.1-P	Field mustard	cytosol	48.76	51.18
Bra034939.1-P	Field mustard	cytosol	50.3	51.14
TraesCS1A01G187400.1	Wheat	peroxisome	66.59	50.95
Bra017730.1-P	Field mustard	cytosol	49.94	50.42
HORVU1Hr1G048970.1	Barley	cytosol, nucleus, peroxisome	65.76	50.23
Bra027209.1-P	Field mustard	cytosol	43.33	45.31
Bra030375.1-P	Field mustard	cytosol	43.21	45.07
Bra040960.1-P	Field mustard	cytosol	42.98	44.83
Bra021132.1-P	Field mustard	cytosol	42.27	44.09
Bra020497.1-P	Field mustard	cytosol	41.09	42.34
Bra037982.1-P	Field mustard	cytosol	35.3	39.29
Bra008515.1-P	Field mustard	mitochondrion, plastid	66.71	38.97
Bra009836.1-P	Field mustard	cytosol	40.5	36.8
Bra040531.1-P	Field mustard	cytosol, nucleus, peroxisome	21.37	17.29
Bra022178.1-P	Field mustard	cytosol, nucleus, peroxisome	21.84	17.26

Protein Annotations

KEGG:00564+3.1.4.4	KEGG:00565+3.1.4.4	Gene3D:2.60.40.150	Gene3D:3.30.870.10	MapMan:5.7.2.4.2	EnsemblPlantsGene:Bra014871
EnsemblPlants:Bra014871.1	EnsemblPlants:Bra014871.1-P	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0004630	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787
GO:GO:0046470	GO:GO:0070290	InterPro:IPR000008	InterPro:IPR001736	InterPro:IPR035892	UniProt:M4DEF0
PFAM:PF00168	PFAM:PF00614	PFAM:PF12357	PIRSF:PIRSF036470	InterPro:PLipase_D/transphosphatidylase	InterPro:PLipase_D_C
InterPro:PLipase_D_fam	InterPro:PLipase_D_pln	PFscan:PS50004	PFscan:PS50035	PANTHER:PTHR18896	PANTHER:PTHR18896:SF65
SMART:SM00155	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF56024	UniParc:UPI0002540F51	:

Description

AT4G11850 (E=0.0) PLDGAMMA1, MEE54 | PLDGAMMA1; phospholipase D

Coordinates

chrA07:+:5731501..5734790

Molecular Weight (calculated)

94403.5 Da

IEP (calculated)

8.445

GRAVY (calculated)

-0.383

Length

847 amino acids

Sequence
(BLAST)

001: MGGGSSHGFG QQPVPFATSS GSLRVELLHG NLDIWVKEAK HLPNMDGFHN RLGGMLSGLT RRNTSKDEKP SKITSDPYVT VSISGAVIGR TFVISNSENP
101: VWMQHFDVPV AHSAAEVHFV VKDSDIIGSQ IMGAVGIPTE QLSSGNRIEG FFPILNSSGK PCKQGAVLSL SVQYTPIERM RLYQMGVGFG NECVGVPGTY
201: FPLRKGGRVT LYQDAHVDDG TLPSVYLDGG VQYRHGKCWE DMADAIRQAR RLVYITGWSV YHPVRLVRRN NDPTDGTLGD LLKAKSQEGV RVLVLVWDDP
301: TSRSLLGFKT QGVMNTSDEE TRRFFKHSSV QVLLCPRSGG KGHSFVKKSE VGTIYTHHQK TVIVDADAGQ NRRKIVAFVG GLDVCNGRFD TPKHPLFRTL
401: KTLHKDDFHN PNFLTTADDG PREPWHDLHS KIDGPAAYDV LANFEERWRK ASKSRGLGKL RSASDDSLLS IERIQDIVGL SEASSVNEND PETWHAQVFR
501: SIDSSSVKGF PKDPKEATGR NLLCGKNILI DMSIHAAYVK AIRSAQHFIY IENQYFLGSS FNWDSNKDLG ANNLIPIEIA LKIANKIRAR EKFAAYIVIP
601: MWPEGAPTSN PIQRILYWQH KTMQMMYQTI HKALVEVGLD GQDEPQDFLN FFCLGTREVA DGTVSVYNSP RTPPKSNANA NAIQVQALKS RRFMIYVHSK
701: GMVVDDEFVL IGSANINQRS LEGTRDTEIA MGGYQPHHSW AKKGSRPRGQ IFGYRMSLWA EHLGFLEQGF EEPENMECVR RVRQLSELNW RQYAAEEVTE
801: MQGHLLKYPV QVDRTGKVSS LPGCETFPDL GGKIIGSFLA LQENLTI

Best Arabidopsis Sequence Match ( AT4G11850.1 )
(BLAST)

001: MAYHPAYTET MSMGGGSSHG GGQQYVPFAT SSGSLRVELL HGNLDIWVKE AKHLPNMDGF HNRLGGMLSG LGRKKVEGEK SSKITSDPYV TVSISGAVIG
101: RTFVISNSEN PVWMQHFDVP VAHSAAEVHF VVKDSDIIGS QIMGAVGIPT EQLCSGNRIE GLFPILNSSG KPCKQGAVLG LSIQYTPMER MRLYQMGVGS
201: GNECVGVPGT YFPLRKGGRV TLYQDAHVDD GTLPSVHLDG GIQYRHGKCW EDMADAIRQA RRLIYITGWS VFHPVRLVRR TNDPTEGTLG ELLKVKSQEG
301: VRVLVLVWDD PTSRSLLGFK TQGVMNTSDE ETRRFFKHSS VQVLLCPRSG GKGHSFIKKS EVGTIYTHHQ KTVIVDAEAA QNRRKIVAFV GGLDLCNGRF
401: DTPKHPLFRT LKTLHKDDFH NPNFVTTADD GPREPWHDLH SKIDGPAAYD VLANFEERWM KASKPRGIGK LKSSSDDSLL RIDRIPDIVG LSEASSANDN
501: DPESWHVQVF RSIDSSSVKG FPKDPKEATG RNLLCGKNIL IDMSIHAAYV KAIRSAQHFI YIENQYFLGS SFNWDSNKDL GANNLIPMEI ALKIANKIRA
601: REKFAAYIVI PMWPEGAPTS NPIQRILYWQ HKTMQMMYQT IYKALVEVGL DSQFEPQDFL NFFCLGTREV PVGTVSVYNS PRKPPQPNAN ANAAQVQALK
701: SRRFMIYVHS KGMVVDDEFV LIGSANINQR SLEGTRDTEI AMGGYQPHYS WAMKGSRPHG QIFGYRMSLW AEHLGFLEQG FEEPENMECV RRVRQLSELN
801: WRQYAAEEVT EMSGHLLKYP VQVDRTGKVS SLPGCETFPD LGGKIIGSFL ALQENLTI

Arabidopsis Description

PLDGAMMA1Phospholipase D gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9T053]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.